Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G16350 - ( inosine-5-monophosphate dehydrogenase putative )
50 Proteins interacs with AT1G16350Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0753
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT5G15200 | PredictedAffinity Capture-MS | FSW = 0.1491
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT3G04120 | PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT2G21580 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25B) |
AT5G22440 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0574
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT5G20290 | PredictedAffinity Capture-MS | FSW = 0.1092
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT5G09650 | PredictedAffinity Capture-MS | FSW = 0.0291
| Unknown | ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G13580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0651
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT4G23430 | PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G33340 | PredictedCo-purification | FSW = 0.0199
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G47250 | PredictedAffinity Capture-MS | FSW = 0.1261
| Unknown | RNA HELICASE PUTATIVE |
AT1G75950 | Predictedtwo hybrid | FSW = 0.0056
| Unknown | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G33370 | Predictedinteraction predictionCo-expression | FSW = 0.0343
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT3G04820 | PredictedAffinity Capture-MS | FSW = 0.0465
| Unknown | PSEUDOURIDINE SYNTHASE |
AT1G75230 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0175
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0372
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G62310 | PredictedAffinity Capture-MS | FSW = 0.1284
| Unknown | RNA HELICASE PUTATIVE |
AT1G04510 | PredictedCo-purificationCo-expression | FSW = 0.0179
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G07370 | Predictedtwo hybridAffinity Capture-MStwo hybridinteraction predictionGene neighbors methodCo-expression | FSW = 0.0089
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G29570 | Predictedtwo hybrid | FSW = 0.0153
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT2G26940 | Predictedtwo hybrid | FSW = 0.0168
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT4G08350 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT4G18040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0748
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT3G08730 | Predictedin vivoin vitrotwo hybridAffinity Capture-MS | FSW = 0.0109
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G59240 | PredictedAffinity Capture-MS | FSW = 0.0806
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
AT4G30800 | PredictedAffinity Capture-MS | FSW = 0.0802
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.0815
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G42190 | Predictedtwo hybrid | FSW = 0.0135
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G17290 | PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | APG5 (AUTOPHAGY 5) TRANSPORTER |
AT1G03530 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT1G04480 | PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
AT1G17760 | PredictedAffinity Capture-MS | FSW = 0.0603
| Unknown | CSTF77 PROTEIN BINDING |
AT2G33240 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | XID MOTOR/ PROTEIN BINDING |
AT3G15460 | PredictedAffinity Capture-MS | FSW = 0.0439
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G24080 | PredictedAffinity Capture-MS | FSW = 0.1009
| Unknown | KRR1 FAMILY PROTEIN |
AT3G46960 | PredictedAffinity Capture-MS | FSW = 0.0415
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT5G26110 | Predictedtwo hybridAffinity Capture-MSinteraction prediction | FSW = 0.0075
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
AT5G53770 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0352
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G61460 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0178
| Unknown | MIM (HYPERSENSITIVE TO MMS IRRADIATION AND MMC) ATP BINDING |
AT5G66100 | PredictedAffinity Capture-MS | FSW = 0.0564
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT1G49760 | PredictedAffinity Capture-MS | FSW = 0.0551
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0362
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G07660 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | STRUCTURAL MAINTENANCE OF CHROMOSOMES (SMC) FAMILY PROTEIN |
AT1G19480 | PredictedAffinity Capture-MS | FSW = 0.0303
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT1G52930 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0139
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT1G29550 | PredictedAffinity Capture-MS | FSW = 0.0436
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT1G22760 | PredictedAffinity Capture-MS | FSW = 0.0611
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G04160 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT1G79470 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0755
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454