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AT2G34210 - ( structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor )

93 Proteins interacs with AT2G34210

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G12610	Predicted Affinity Capture-MS	FSW = 0.1134	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN
AT3G11964	Predicted Affinity Capture-MS	FSW = 0.0911	Class C: nucleus	RNA BINDING
AT2G44680	Predicted Affinity Capture-MS	FSW = 0.0612	Class C: nucleus	CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT4G26720	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0222	Class C: nucleus	PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G10300	Predicted Affinity Capture-MS	FSW = 0.0552	Class C: nucleus	GTP-BINDING PROTEIN-RELATED
AT4G25630	Predicted Affinity Capture-MS	FSW = 0.0705	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT4G26600	Predicted Affinity Capture-MS	FSW = 0.0439	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT3G57660	Predicted Affinity Capture-MS	FSW = 0.0870	Class C: nucleus	NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING
AT3G16980	Predicted Affinity Capture-MS	FSW = 0.1240	Class C: nucleus	NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT3G57150	Predicted Affinity Capture-MS	FSW = 0.0632	Class C: nucleus	NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT4G10670	Predicted Affinity Capture-MS	FSW = 0.2319	Class C: nucleus	GTC2
AT3G13940	Predicted Affinity Capture-MS	FSW = 0.0500	Class C: nucleus	DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G54910	Predicted Affinity Capture-MS	FSW = 0.0744	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT3G16810	Predicted Affinity Capture-MS	FSW = 0.0597	Class C: nucleus	APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT1G63210	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Synthetic Lethality	FSW = 0.2670	Class C: nucleus	RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR
AT1G17980	Predicted Affinity Capture-MS	FSW = 0.0327	Class C: nucleus	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT2G41630	Predicted Affinity Capture-MS	FSW = 0.0639	Class C: nucleus	TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT2G38560	Predicted Affinity Capture-MS synthetic growth defect	FSW = 0.1604	Class C: nucleus	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT2G13370	Predicted Affinity Capture-Western Synthetic Rescue	FSW = 0.1462	Class C: nucleus	CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G18040	Predicted synthetic growth defect	FSW = 0.0326	Class C: nucleus	CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE
AT5G09920	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1966	Class C: nucleus	NRPB4 DNA-DIRECTED RNA POLYMERASE
AT3G06010	Predicted Synthetic Rescue	FSW = 0.0502	Class C: nucleus	ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G06210	Predicted Affinity Capture-MS	FSW = 0.0995	Class C: nucleus	ELF8 (EARLY FLOWERING 8) BINDING
AT1G07660	Predicted interologs mapping	FSW = 0.0771	Unknown	HISTONE H4
AT5G64960	Predicted biochemical Co-purification	FSW = 0.0206	Unknown	CDKC2 (CYCLIN DEPENDENT KINASE GROUP C 2) KINASE
AT4G35800	Predicted synthetic growth defect Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western synthetic growth defect	FSW = 0.2391	Unknown	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G73180	Predicted Affinity Capture-MS	FSW = 0.0251	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED
AT3G01310	Predicted Affinity Capture-MS	FSW = 0.0404	Unknown	ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT2G18040	Predicted Affinity Capture-MS	FSW = 0.0929	Unknown	PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT1G55860	Predicted Affinity Capture-MS	FSW = 0.0109	Unknown	UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE
AT1G75510	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1509	Unknown	TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT2G44180	Predicted Affinity Capture-MS	FSW = 0.0105	Unknown	MAP2A (METHIONINE AMINOPEPTIDASE 2A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT4G17620	Predicted Affinity Capture-MS	FSW = 0.0026	Unknown	GLYCINE-RICH PROTEIN
AT3G52090	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1685	Unknown	NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G28730	Predicted Affinity Capture-MS	FSW = 0.1217	Unknown	ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT4G21710	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Synthetic Rescue	FSW = 0.2106	Unknown	NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G15400	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2166	Unknown	NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G59180	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1877	Unknown	NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING
AT5G23880	Predicted Affinity Capture-MS	FSW = 0.0369	Unknown	CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING
AT1G10490	Predicted Affinity Capture-MS	FSW = 0.0350	Unknown	UNKNOWN PROTEIN
AT5G08565	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid Synthetic Lethality	FSW = 0.3620	Unknown	POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT5G28210	Predicted two hybrid Protein-peptide Reconstituted Complex	FSW = 0.0364	Unknown	MRNA CAPPING ENZYME FAMILY PROTEIN
AT5G61150	Predicted Affinity Capture-MS Synthetic Rescue	FSW = 0.0733	Unknown	VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT1G79730	Predicted Affinity Capture-MS Affinity Capture-Western Synthetic Rescue	FSW = 0.1493	Unknown	ELF7 (EARLY FLOWERING 7)
AT1G61040	Predicted Affinity Capture-MS synthetic growth defect	FSW = 0.1808	Unknown	VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G42440	Predicted Affinity Capture-MS	FSW = 0.0303	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT3G22590	Predicted Affinity Capture-MS	FSW = 0.1122	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G20650	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0363	Unknown	MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G09100	Predicted Affinity Capture-MS Synthetic Lethality	FSW = 0.0850	Unknown	MRNA CAPPING ENZYME FAMILY PROTEIN
AT2G38280	Predicted Affinity Capture-MS	FSW = 0.0083	Unknown	FAC1 (EMBRYONIC FACTOR1) AMP DEAMINASE
AT2G23080	Predicted Affinity Capture-MS	FSW = 0.1893	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G23070	Predicted Affinity Capture-MS	FSW = 0.0671	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G77050	Predicted Affinity Capture-MS	FSW = 0.0480	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G31970	Predicted Affinity Capture-MS	FSW = 0.0218	Unknown	STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT4G34910	Predicted Affinity Capture-MS	FSW = 0.0149	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT5G13680	Predicted Affinity Capture-MS	FSW = 0.0668	Unknown	ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT1G16350	Predicted Affinity Capture-MS	FSW = 0.0180	Unknown	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT1G32130	Predicted Affinity Capture-MS	FSW = 0.0768	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G25260	Predicted Affinity Capture-MS	FSW = 0.0138	Unknown	ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G59760	Predicted Affinity Capture-MS	FSW = 0.0145	Unknown	ATP-DEPENDENT RNA HELICASE PUTATIVE
AT1G69070	Predicted Affinity Capture-MS	FSW = 0.0206	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT5G14520	Predicted Affinity Capture-MS	FSW = 0.0481	Unknown	PESCADILLO-RELATED
AT1G22760	Predicted Affinity Capture-MS	FSW = 0.0725	Unknown	PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT5G67100	Predicted Affinity Capture-MS	FSW = 0.0218	Unknown	ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE
AT1G08260	Predicted Affinity Capture-MS	FSW = 0.0125	Unknown	TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT5G22010	Predicted Affinity Capture-MS	FSW = 0.0159	Unknown	ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G13640	Predicted Affinity Capture-MS	FSW = 0.0128	Unknown	ATRLI1 TRANSPORTER
AT1G17760	Predicted Affinity Capture-MS	FSW = 0.0440	Unknown	CSTF77 PROTEIN BINDING
AT3G09720	Predicted Affinity Capture-MS	FSW = 0.0155	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G29940	Predicted Affinity Capture-MS	FSW = 0.0659	Unknown	NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT5G41010	Predicted Affinity Capture-MS	FSW = 0.1344	Unknown	NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G22320	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1826	Unknown	NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G04630	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2462	Unknown	NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G54250	Predicted Affinity Capture-MS	FSW = 0.1894	Unknown	NRPB8A DNA-DIRECTED RNA POLYMERASE
AT1G60620	Predicted Affinity Capture-MS	FSW = 0.0522	Unknown	ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G16800	Predicted Affinity Capture-MS	FSW = 0.0404	Unknown	TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED
AT3G47460	Predicted Affinity Capture-MS	FSW = 0.0128	Unknown	ATSMC2 TRANSPORTER
AT2G27170	Predicted Affinity Capture-MS	FSW = 0.0071	Unknown	TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING
AT1G04950	Predicted Affinity Capture-MS	FSW = 0.0506	Unknown	TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT3G01160	Predicted Affinity Capture-MS	FSW = 0.0574	Unknown	UNKNOWN PROTEIN
AT5G11900	Predicted Affinity Capture-MS	FSW = 0.0128	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN
AT5G22370	Predicted Affinity Capture-MS	FSW = 0.0105	Unknown	QQT1 (QUATRE-QUART 1) ATP BINDING / NUCLEOTIDE BINDING
AT2G47420	Predicted Affinity Capture-MS	FSW = 0.0109	Unknown	DIMETHYLADENOSINE TRANSFERASE PUTATIVE
AT5G02530	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0576	Unknown	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G59410	Predicted Affinity Capture-MS	FSW = 0.0071	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT3G06670	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid	FSW = 0.0259	Unknown	BINDING
AT1G36730	Predicted Affinity Capture-MS	FSW = 0.0369	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT1G02080	Predicted interologs mapping	FSW = 0.0187	Unknown	TRANSCRIPTIONAL REGULATOR-RELATED
AT1G09200	Predicted interologs mapping	FSW = 0.0601	Unknown	HISTONE H3
AT5G10270	Predicted synthetic growth defect Synthetic Rescue	FSW = 0.1120	Unknown	CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G63610	Predicted synthetic growth defect	FSW = 0.0485	Unknown	CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G20320	Predicted synthetic growth defect	FSW = 0.2269	Unknown	NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN
AT3G58560	Predicted Synthetic Rescue	FSW = 0.0421	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT2G34210 - ( structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor )

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