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AT3G06010 - ( ATCHR12 ATP binding / DNA binding / helicase/ nucleic acid binding )

41 Proteins interacs with AT3G06010

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G24190	Predicted Affinity Capture-Western	FSW = 0.0773	Class C: nucleus	SHD (SHEPHERD) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G18450	Predicted Co-purification Affinity Capture-Western in vivo Co-expression	FSW = 0.0882	Class C: nucleus	ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G47620	Predicted two hybrid	FSW = 0.0719	Class C: nucleus	ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT4G34430	Predicted Affinity Capture-Western Co-purification Affinity Capture-Western	FSW = 0.0196	Class C: nucleus	CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT3G01890	Predicted Affinity Capture-MS	FSW = 0.2000	Class C: nucleus	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT3G54610	Predicted Synthetic Lethality synthetic growth defect Phenotypic Enhancement synthetic growth defect Synthetic Lethality	FSW = 0.1770	Class C: nucleus	GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT2G33610	Predicted Co-purification Co-purification Co-purification Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Co-purification Co-purification Affinity Capture-Western Affinity Capture-MS two hybrid Co-expression	FSW = 0.3678	Class C: nucleus	ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING
AT3G44530	Predicted Affinity Capture-Western	FSW = 0.0519	Class C: nucleus	HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G17590	Predicted Co-purification Co-purification Co-purification Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification Co-purification co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-MS	FSW = 0.1766	Class C: nucleus	BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT1G67230	Predicted Gene fusion method	FSW = 0.0207	Class C: nucleus	LINC1 (LITTLE NUCLEI1)
AT1G63210	Predicted Synthetic Rescue	FSW = 0.1707	Class C: nucleus	RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR
AT4G24440	Predicted interologs mapping Synthetic Lethality	FSW = 0.0968	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S)
AT1G67970	Predicted in vitro Affinity Capture-Western	FSW = 0.0887	Class C: nucleus	AT-HSFA8 DNA BINDING / TRANSCRIPTION FACTOR
AT1G07470	Predicted interologs mapping	FSW = 0.0546	Class C: nucleus	TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE
AT1G55520	Predicted interologs mapping Synthetic Lethality	FSW = 0.1412	Class C: nucleus	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT2G13370	Predicted Synthetic Lethality	FSW = 0.0747	Class C: nucleus	CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G38560	Predicted Synthetic Lethality	FSW = 0.0781	Class C: nucleus	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT2G34210	Predicted Synthetic Rescue	FSW = 0.0502	Class C: nucleus	STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT3G27280	Predicted Affinity Capture-Western in vivo Co-expression	FSW = 0.0400	Unknown	ATPHB4 (PROHIBITIN 4)
AT1G07660	Predicted Synthetic Rescue	FSW = 0.1061	Unknown	HISTONE H4
AT4G35800	Predicted in vitro Co-purification Co-purification Co-purification in vitro Affinity Capture-Western in vivo Co-expression	FSW = 0.0496	Unknown	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G44780	Predicted in vivo in vivo in vitro in vitro in vitro in vivo Co-expression	FSW = 0.0303	Unknown	UNKNOWN PROTEIN
AT5G58230	Predicted Co-purification	FSW = 0.0908	Unknown	MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT2G16600	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0211	Unknown	ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT4G26840	Predicted Affinity Capture-MS Co-expression	FSW = 0.0117	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G70060	Predicted Co-purification Reconstituted Complex	FSW = 0.1364	Unknown	SNL4 (SIN3-LIKE 4)
AT3G51270	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0507	Unknown	ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT2G28820	Predicted Affinity Capture-MS	FSW = 0.0296	Unknown	ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT1G31660	Predicted Affinity Capture-MS	FSW = 0.0148	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G17370	Predicted Affinity Capture-MS	FSW = 0.0140	Unknown	UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING
AT1G08880	Predicted Affinity Capture-MS	FSW = 0.0583	Unknown	H2AXA DNA BINDING
AT3G07740	Predicted Colocalization synthetic growth defect	FSW = 0.1603	Unknown	ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR
AT1G04160	Predicted Colocalization	FSW = 0.0114	Unknown	XIB (MYOSIN XI B) MOTOR
AT1G66740	Predicted Phenotypic Enhancement	FSW = 0.0570	Unknown	SGA2
AT3G14390	Predicted synthetic growth defect	FSW = 0.0364	Unknown	DIAMINOPIMELATE DECARBOXYLASE PUTATIVE / DAP CARBOXYLASE PUTATIVE
AT5G13780	Predicted synthetic growth defect	FSW = 0.0219	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT1G80410	Predicted synthetic growth defect	FSW = 0.0180	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G17930	Predicted synthetic growth defect Co-expression	FSW = 0.2124	Unknown	BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT1G52740	Predicted Synthetic Lethality	FSW = 0.0987	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G54140	Predicted Synthetic Lethality	FSW = 0.0821	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G09200	Predicted Synthetic Rescue	FSW = 0.2059	Unknown	HISTONE H3

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT3G06010 - ( ATCHR12 ATP binding / DNA binding / helicase/ nucleic acid binding )

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Fasta sequences:

Quick help

FSW

C3

PEP

How to cite