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AT4G24440 - ( transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

24 Proteins interacs with AT4G24440

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G01900	Experimental	FSW = 0.0315	Class A: nucleus Class D: nucleus (p = 0.78)	WRKY62 TRANSCRIPTION FACTOR
AT1G07480	Experimental two hybrid	FSW = 0.1667	Class A: nucleus Class D: nucleus (p = 0.78)	TRANSCRIPTION FACTOR IIA LARGE SUBUNIT / TFIIA LARGE SUBUNIT (TFIIA-L)
AT3G10330	Predicted Co-crystal Structure interaction prediction	FSW = 0.1048	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT4G20340	Predicted in vitro	FSW = 0.1103	Class C: nucleus	RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G03280	Predicted in vitro	FSW = 0.1939	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN
AT5G03720	Predicted Affinity Capture-MS in vitro in vivo	FSW = 0.1177	Class C: nucleus	AT-HSFA3 DNA BINDING / TRANSCRIPTION FACTOR
AT5G19310	Predicted interologs mapping Synthetic Lethality	FSW = 0.0469	Class C: nucleus	HOMEOTIC GENE REGULATOR PUTATIVE
AT3G54610	Predicted Synthetic Lethality	FSW = 0.1169	Class C: nucleus	GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G13445	Predicted Reconstituted Complex Reconstituted Complex interologs mapping interologs mapping interologs mapping Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex Co-crystal Structure Co-crystal Structure Reconstituted Complex Reconstituted Complex Affinity Capture-MS in vivo in vitro in vitro in vivo in vivo in vivo in vitro Affinity Capture-MS Co-crystal Structure Reconstituted Complex interologs mapping interaction prediction Enriched domain pair Co-expression	FSW = 0.0693	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G16820	Predicted in vivo in vitro Affinity Capture-MS	FSW = 0.0480	Class C: nucleus	HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT4G10710	Predicted interologs mapping Synthetic Lethality	FSW = 0.0775	Class C: nucleus	SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G10670	Predicted interologs mapping Synthetic Lethality	FSW = 0.0988	Class C: nucleus	GTC2
AT4G20810	Predicted in vitro	FSW = 0.1162	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN
AT2G41630	Predicted Co-crystal Structure	FSW = 0.1162	Class C: nucleus	TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT5G59230	Predicted in vitro in vitro two hybrid in vitro in vivo	FSW = 0.1298	Class C: nucleus	TRANSCRIPTION FACTOR-RELATED
AT1G07470	Predicted interaction prediction two hybrid two hybrid Synthetic Lethality Reconstituted Complex Co-purification Co-purification Co-crystal Structure Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS in vitro in vitro in vitro in vivo interologs mapping Enriched domain pair	FSW = 0.3785	Class C: nucleus	TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE
AT1G55520	Predicted Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex in vivo in vivo in vivo in vitro in vitro in vitro interologs mapping interologs mapping Co-crystal Structure Co-crystal Structure Co-crystal Structure interologs mapping Reconstituted Complex Enriched domain pair Co-expression	FSW = 0.1634	Class C: nucleus	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT1G67970	Predicted in vivo in vitro Affinity Capture-MS	FSW = 0.1389	Class C: nucleus	AT-HSFA8 DNA BINDING / TRANSCRIPTION FACTOR
AT5G25150	Predicted Reconstituted Complex	FSW = 0.0546	Class C: nucleus	TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT3G06010	Predicted interologs mapping Synthetic Lethality	FSW = 0.0968	Class C: nucleus	ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G11330	Predicted Phenotypic Suppression	FSW = 0.0131	Unknown	ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT1G15780	Predicted two hybrid	FSW = 0.0839	Unknown	UNKNOWN PROTEIN
AT1G32750	Predicted interologs mapping	FSW = 0.1513	Unknown	HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE
AT1G59580	Predicted Phenotypic Suppression	FSW = 0.0066	Unknown	ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT4G24440 - ( transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

Class A:

Class D:

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Class C:

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Unknown

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Unknown

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Fasta sequences:

Quick help

FSW

C3

PEP

How to cite