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AT3G54610 - ( GCN5 DNA binding / H3 histone acetyltransferase/ histone acetyltransferase )

103 Proteins interacs with AT3G54610

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G25490	Experimental Reconstituted Complex	FSW = 0.0338	Class D: nucleus (p = 0.78) mitochondrion (p = 0.82)	CBF1 (C-REPEAT/DRE BINDING FACTOR 1) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT4G16420	Experimental enzymatic study Reconstituted Complex affinity technology	FSW = 0.1216	Class D: nucleus (p = 0.78)	ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT3G07740	Experimental Reconstituted Complex	FSW = 0.2225	Unknown	ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR
AT1G56070	Predicted Affinity Capture-MS	FSW = 0.0127	Class C: nucleus	LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT3G12780	Predicted Affinity Capture-MS	FSW = 0.0255	Class C: nucleus	PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE
AT5G59690	Predicted Synthetic Rescue biochemical Reconstituted Complex biochemical Synthetic Rescue Synthetic Lethality Affinity Capture-Western	FSW = 0.1474	Class C: nucleus	HISTONE H4
AT1G79280	Predicted Affinity Capture-Western Reconstituted Complex	FSW = 0.0075	Class C: nucleus	NUA (NUCLEAR PORE ANCHOR)
AT1G07790	Predicted biochemical Co-expression	FSW = 0.0709	Class C: nucleus	HTB1 DNA BINDING
AT5G12250	Predicted Affinity Capture-MS	FSW = 0.0099	Class C: nucleus	TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.0053	Class C: nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT1G16970	Predicted Reconstituted Complex two hybrid co-fractionation Co-fractionation Affinity Capture-Western	FSW = 0.0831	Class C: nucleus	KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT2G17520	Predicted two hybrid Reconstituted Complex Affinity Capture-Western	FSW = 0.0098	Class C: nucleus	IRE1A ENDORIBONUCLEASE/ KINASE
AT5G24360	Predicted interologs mapping interaction prediction	FSW = 0.0102	Class C: nucleus	IRE1-1 (INOSITOL REQUIRING 1-1) ATP BINDING / ENDORIBONUCLEASE PRODUCING 5-PHOSPHOMONOESTERS / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G48050	Predicted co-fractionation Co-fractionation Affinity Capture-Western	FSW = 0.0247	Class C: nucleus	KU80 DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT3G13445	Predicted synthetic growth defect interologs mapping Affinity Capture-MS Synthetic Lethality	FSW = 0.1187	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G16980	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0540	Class C: nucleus	NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT3G17590	Predicted synthetic growth defect synthetic growth defect Affinity Capture-Western interaction prediction Co-expression	FSW = 0.0946	Class C: nucleus	BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT1G18270	Predicted Affinity Capture-MS	FSW = 0.0370	Class C: nucleus	KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN
AT5G09920	Predicted synthetic growth defect	FSW = 0.0796	Class C: nucleus	NRPB4 DNA-DIRECTED RNA POLYMERASE
AT3G54280	Predicted Synthetic Lethality	FSW = 0.0979	Class C: nucleus	RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G10710	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.1517	Class C: nucleus	SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G10670	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.1327	Class C: nucleus	GTC2
AT5G19310	Predicted Phenotypic Enhancement synthetic growth defect Synthetic Lethality Phenotypic Enhancement Synthetic Lethality synthetic growth defect interaction prediction	FSW = 0.1538	Class C: nucleus	HOMEOTIC GENE REGULATOR PUTATIVE
AT1G24260	Predicted Phenotypic Enhancement	FSW = 0.0135	Class C: nucleus	SEP3 (SEPALLATA3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT3G25940	Predicted Synthetic Lethality	FSW = 0.0063	Class C: nucleus	TRANSCRIPTION FACTOR S-II (TFIIS) DOMAIN-CONTAINING PROTEIN
AT4G24440	Predicted Synthetic Lethality	FSW = 0.1169	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S)
AT4G38130	Predicted Synthetic Rescue Phenotypic Enhancement Synthetic Rescue Co-expression	FSW = 0.0984	Class C: nucleus	HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT1G18450	Predicted co-fractionation Co-fractionation	FSW = 0.0923	Class C: nucleus	ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G31720	Predicted interaction prediction Co-purification Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping	FSW = 0.1152	Class C: nucleus	TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT3G57300	Predicted Phenotypic Enhancement	FSW = 0.1405	Class C: nucleus	INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G41020	Predicted Reconstituted Complex in vitro in vivo	FSW = 0.0100	Class C: nucleus	MYB FAMILY TRANSCRIPTION FACTOR
AT5G04240	Predicted biochemical	FSW = 0.0204	Class C: nucleus	ELF6 (EARLY FLOWERING 6) TRANSCRIPTION FACTOR
AT2G37470	Predicted biochemical	FSW = 0.0825	Class C: nucleus	HISTONE H2B PUTATIVE
AT2G13370	Predicted Affinity Capture-MS synthetic growth defect	FSW = 0.1919	Class C: nucleus	CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G38560	Predicted Affinity Capture-Western	FSW = 0.1200	Class C: nucleus	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT5G25150	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western interologs mapping interaction prediction	FSW = 0.1633	Class C: nucleus	TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT1G55520	Predicted Affinity Capture-MS interologs mapping synthetic growth defect Synthetic Lethality	FSW = 0.1734	Class C: nucleus	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT3G06010	Predicted Synthetic Lethality synthetic growth defect Phenotypic Enhancement synthetic growth defect Synthetic Lethality	FSW = 0.1770	Class C: nucleus	ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G07660	Predicted Synthetic Rescue biochemical biochemical Reconstituted Complex Synthetic Lethality Synthetic Rescue	FSW = 0.1098	Unknown	HISTONE H4
AT2G21580	Predicted Affinity Capture-MS	FSW = 0.0084	Unknown	40S RIBOSOMAL PROTEIN S25 (RPS25B)
AT3G52140	Predicted Affinity Capture-MS	FSW = 0.0279	Unknown	TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT3G11630	Predicted synthetic growth defect	FSW = 0.0071	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT1G75330	Predicted interologs mapping	FSW = 0.0189	Unknown	OTC (ORNITHINE CARBAMOYLTRANSFERASE) AMINO ACID BINDING / CARBOXYL- OR CARBAMOYLTRANSFERASE/ ORNITHINE CARBAMOYLTRANSFERASE
AT5G63110	Predicted Synthetic Rescue Synthetic Rescue Phenotypic Enhancement	FSW = 0.1103	Unknown	HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT4G35800	Predicted Affinity Capture-Western	FSW = 0.1140	Unknown	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G52640	Predicted synthetic growth defect	FSW = 0.0226	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G50480	Predicted Affinity Capture-MS	FSW = 0.0069	Unknown	THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) ATP BINDING / COPPER ION BINDING / FORMATE-TETRAHYDROFOLATE LIGASE
AT5G19990	Predicted Synthetic Lethality	FSW = 0.0345	Unknown	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT2G18040	Predicted interologs mapping	FSW = 0.0285	Unknown	PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT4G11420	Predicted Affinity Capture-MS	FSW = 0.0045	Unknown	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT5G01630	Predicted in vitro in vivo	FSW = 0.0098	Unknown	BRCA2B (BRCA2-LIKE B) PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT3G10920	Predicted Affinity Capture-MS	FSW = 0.0015	Unknown	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT3G18480	Predicted biochemical	FSW = 0.0115	Unknown	ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT)
AT3G28730	Predicted Synthetic Lethality	FSW = 0.0928	Unknown	ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT3G58780	Predicted Phenotypic Enhancement	FSW = 0.0185	Unknown	SHP1 (SHATTERPROOF 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT1G54140	Predicted Synthetic Lethality Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS interaction prediction	FSW = 0.2404	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT2G17930	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS interologs mapping interaction prediction	FSW = 0.2125	Unknown	BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT3G12980	Predicted Affinity Capture-Western Reconstituted Complex co-fractionation Co-fractionation	FSW = 0.0401	Unknown	HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT1G01510	Predicted biochemical	FSW = 0.0278	Unknown	AN (ANGUSTIFOLIA) PROTEIN BINDING
AT5G63610	Predicted Affinity Capture-Western	FSW = 0.0946	Unknown	CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G36080	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS	FSW = 0.2258	Unknown	FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN
AT5G60340	Predicted Affinity Capture-Western	FSW = 0.0132	Unknown	MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN
AT1G04950	Predicted interaction prediction Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping	FSW = 0.2000	Unknown	TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G08880	Predicted biochemical Co-expression	FSW = 0.2067	Unknown	H2AXA DNA BINDING
AT1G13870	Predicted Phenotypic Enhancement Phenotypic Suppression	FSW = 0.0883	Unknown	DRL1 (DEFORMED ROOTS AND LEAVES 1) CALMODULIN BINDING / PURINE NUCLEOTIDE BINDING
AT1G25220	Predicted Affinity Capture-MS	FSW = 0.0177	Unknown	ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1) ANTHRANILATE SYNTHASE
AT1G49540	Predicted Synthetic Lethality	FSW = 0.0959	Unknown	NUCLEOTIDE BINDING
AT1G52740	Predicted synthetic growth defect Affinity Capture-Western biochemical	FSW = 0.2134	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G55300	Predicted Affinity Capture-MS	FSW = 0.0508	Unknown	TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G59890	Predicted Synthetic Rescue	FSW = 0.1265	Unknown	SNL5 (SIN3-LIKE 5)
AT1G61010	Predicted Affinity Capture-MS	FSW = 0.0191	Unknown	CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING
AT2G31305	Predicted Affinity Capture-MS	FSW = 0.0456	Unknown	INH3 (INHIBITOR-3)
AT2G39840	Predicted Affinity Capture-MS	FSW = 0.0460	Unknown	TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G10070	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS	FSW = 0.1195	Unknown	TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G12670	Predicted Affinity Capture-MS	FSW = 0.0230	Unknown	EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT3G22590	Predicted Affinity Capture-MS	FSW = 0.1258	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G24010	Predicted synthetic growth defect	FSW = 0.0134	Unknown	ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G24090	Predicted Affinity Capture-MS	FSW = 0.0091	Unknown	GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.0085	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G45630	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.0945	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G46320	Predicted Reconstituted Complex biochemical Synthetic Lethality Affinity Capture-Western	FSW = 0.1052	Unknown	HISTONE H4
AT1G32750	Predicted synthetic growth defect	FSW = 0.1744	Unknown	HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE
AT1G54390	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.0569	Unknown	PHD FINGER PROTEIN-RELATED
AT1G66740	Predicted Synthetic Lethality	FSW = 0.1170	Unknown	SGA2
AT1G67500	Predicted Phenotypic Enhancement	FSW = 0.0230	Unknown	ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT3G01090	Predicted Reconstituted Complex biochemical	FSW = 0.0582	Unknown	AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT4G22140	Predicted Synthetic Lethality	FSW = 0.0948	Unknown	DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G31120	Predicted Synthetic Lethality	FSW = 0.0631	Unknown	SKB1 (SHK1 BINDING PROTEIN 1) PROTEIN METHYLTRANSFERASE
AT5G09740	Predicted synthetic growth defect	FSW = 0.1249	Unknown	HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10790	Predicted synthetic growth defect Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS synthetic growth defect Colocalization interaction prediction	FSW = 0.1933	Unknown	UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G13680	Predicted Synthetic Lethality	FSW = 0.0814	Unknown	ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G53770	Predicted Synthetic Lethality	FSW = 0.0354	Unknown	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT3G58560	Predicted Synthetic Lethality	FSW = 0.1041	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G10390	Predicted biochemical Synthetic Lethality biochemical Reconstituted Complex biochemical Synthetic Lethality Affinity Capture-Western	FSW = 0.1635	Unknown	HISTONE H3
AT5G10400	Predicted biochemical Synthetic Rescue biochemical biochemical Reconstituted Complex biochemical Synthetic Rescue Synthetic Lethality Affinity Capture-Western	FSW = 0.1698	Unknown	HISTONE H3
AT5G18230	Predicted Synthetic Lethality	FSW = 0.1179	Unknown	TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN
AT5G19680	Predicted Affinity Capture-MS	FSW = 0.0262	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN
AT5G50320	Predicted Phenotypic Enhancement Phenotypic Enhancement Synthetic Lethality Phenotypic Suppression Co-expression	FSW = 0.1517	Unknown	ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT2G10440	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western interologs mapping interaction prediction	FSW = 0.2133	Unknown	UNKNOWN PROTEIN
AT1G15780	Predicted Affinity Capture-Western	FSW = 0.1622	Unknown	UNKNOWN PROTEIN
AT1G09200	Predicted Synthetic Rescue biochemical biochemical biochemical Reconstituted Complex Synthetic Lethality Synthetic Rescue Co-expression	FSW = 0.1882	Unknown	HISTONE H3
AT1G10450	Predicted Synthetic Rescue	FSW = 0.1013	Unknown	SNL6 (SIN3-LIKE 6)
AT3G14390	Predicted Synthetic Rescue	FSW = 0.0153	Unknown	DIAMINOPIMELATE DECARBOXYLASE PUTATIVE / DAP CARBOXYLASE PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT3G54610 - ( GCN5 DNA binding / H3 histone acetyltransferase/ histone acetyltransferase )

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