Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G24830 - ( 60S ribosomal protein L13A (RPL13aB) )
102 Proteins interacs with AT3G24830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G42580 | Experimentalphage display | FSW = 0.0081
| Unknown | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3) BINDING / PROTEIN BINDING |
AT3G04920 | PredictedAffinity Capture-MS | FSW = 0.4207
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.3221
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G18020 | PredictedAffinity Capture-MS | FSW = 0.5260
| Unknown | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.3424
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT3G09200 | PredictedAffinity Capture-MS | FSW = 0.2752
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT2G42740 | PredictedAffinity Capture-MS | FSW = 0.5197
| Unknown | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.2090
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT2G47610 | PredictedAffinity Capture-MS | FSW = 0.4116
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT5G15200 | PredictedAffinity Capture-MS | FSW = 0.3267
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT1G33140 | PredictedAffinity Capture-MS | FSW = 0.3957
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G67430 | PredictedAffinity Capture-MS | FSW = 0.5137
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.3984
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.3281
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G27850 | PredictedAffinity Capture-MS | FSW = 0.2687
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.4010
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G34480 | PredictedAffinity Capture-MS | FSW = 0.3537
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT4G09720 | Predictedtwo hybrid | FSW = 0.0603
| Unknown | RAS-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT1G66580 | PredictedAffinity Capture-MS | FSW = 0.4713
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT1G34030 | PredictedAffinity Capture-MS | FSW = 0.2258
| Unknown | 40S RIBOSOMAL PROTEIN S18 (RPS18B) |
AT3G62870 | PredictedAffinity Capture-MStwo hybridsynthetic growth defect | FSW = 0.0156
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G07110 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2206
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AA) |
AT5G22440 | PredictedAffinity Capture-MS | FSW = 0.4715
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT5G09650 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT1G48830 | PredictedAffinity Capture-MS | FSW = 0.3260
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
AT2G09990 | PredictedAffinity Capture-MS | FSW = 0.4221
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT5G19830 | PredictedAffinity Capture-MS | FSW = 0.0038
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0093
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0486
| Unknown | HISTONE H4 |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.4558
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT5G53480 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT3G58510 | PredictedAffinity Capture-MS | FSW = 0.1478
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0019
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT4G34670 | PredictedAffinity Capture-MS | FSW = 0.3401
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT2G27710 | PredictedAffinity Capture-MS | FSW = 0.4180
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
AT3G11510 | PredictedAffinity Capture-MS | FSW = 0.4318
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT5G39740 | PredictedAffinity Capture-MS | FSW = 0.2825
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT2G37190 | PredictedAffinity Capture-MS | FSW = 0.4328
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
AT4G00100 | PredictedAffinity Capture-MS | FSW = 0.3446
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G13560 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-MS | FSW = 0.0659
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.4779
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT1G70730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1213
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
AT5G60790 | PredictedAffinity Capture-MS | FSW = 0.0897
| Unknown | ATGCN1 TRANSPORTER |
AT1G74270 | PredictedAffinity Capture-MS | FSW = 0.1811
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AC) |
AT1G70600 | PredictedAffinity Capture-MS | FSW = 0.4464
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G02230 | PredictedAffinity Capture-MS | FSW = 0.3223
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
AT4G15000 | PredictedAffinity Capture-MS | FSW = 0.3618
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT3G53870 | PredictedAffinity Capture-MS | FSW = 0.3173
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT1G77840 | PredictedAffinity Capture-MS | FSW = 0.1557
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT5G19310 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.3963
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT3G54610 | PredictedAffinity Capture-MS | FSW = 0.0085
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT4G25630 | PredictedAffinity Capture-MS | FSW = 0.1735
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G58660 | PredictedAffinity Capture-MS | FSW = 0.2313
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT3G55620 | PredictedAffinity Capture-MS | FSW = 0.2005
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT1G72440 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3009
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G57150 | PredictedAffinity Capture-MS | FSW = 0.1317
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT4G17390 | PredictedAffinity Capture-MS | FSW = 0.5510
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT3G16810 | PredictedAffinity Capture-MS | FSW = 0.2237
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT5G48240 | PredictedAffinity Capture-MS | FSW = 0.2099
| Unknown | UNKNOWN PROTEIN |
AT3G12860 | PredictedAffinity Capture-MS | FSW = 0.1246
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT5G58420 | PredictedAffinity Capture-MS | FSW = 0.4303
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT1G57550 | PredictedReconstituted ComplexAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0943
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G73190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0848
| Unknown | TIP31 WATER CHANNEL |
AT4G17620 | PredictedAffinity Capture-MS | FSW = 0.1866
| Unknown | GLYCINE-RICH PROTEIN |
AT5G59240 | PredictedAffinity Capture-MS | FSW = 0.3076
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
AT5G48760 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0463
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AD) |
AT1G10490 | PredictedAffinity Capture-MS | FSW = 0.2190
| Unknown | UNKNOWN PROTEIN |
AT1G50920 | PredictedAffinity Capture-MS | FSW = 0.2571
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.4554
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G56710 | PredictedAffinity Capture-MS | FSW = 0.3390
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT1G33040 | PredictedCo-purificationAffinity Capture-MS | FSW = 0.1064
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT1G34580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.0539
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G18220 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1497
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT3G15460 | PredictedAffinity Capture-MS | FSW = 0.2183
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT1G04170 | PredictedAffinity Capture-MS | FSW = 0.0459
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT1G13950 | PredictedSynthetic Lethality | FSW = 0.0101
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0040
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G60710 | PredictedAffinity Capture-Western | FSW = 0.1066
| Unknown | ATB2 OXIDOREDUCTASE |
AT2G21440 | PredictedAffinity Capture-MS | FSW = 0.2085
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G27200 | PredictedAffinity Capture-MS | FSW = 0.1426
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT2G34180 | PredictedAffinity Capture-Western | FSW = 0.0300
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G18740 | PredictedAffinity Capture-MS | FSW = 0.4589
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT3G23390 | PredictedAffinity Capture-MS | FSW = 0.3726
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA) |
AT4G19210 | PredictedAffinity Capture-MS | FSW = 0.1853
| Unknown | ATRLI2 TRANSPORTER |
AT4G26510 | PredictedAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.0887
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT4G30540 | PredictedSynthetic Lethality | FSW = 0.0699
| Unknown | GLUTAMINE AMIDOTRANSFERASE CLASS-I DOMAIN-CONTAINING PROTEIN |
AT5G14070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1098
| Unknown | ROXY2 ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT5G15070 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G22480 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0945
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
AT5G38890 | PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G57480 | Predictedsynthetic growth defect | FSW = 0.0080
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT5G61770 | PredictedAffinity Capture-MS | FSW = 0.1003
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT5G66640 | Predictedbiochemical | FSW = 0.0180
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.4287
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G46840 | PredictedAffinity Capture-MS | FSW = 0.1734
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G65900 | PredictedAffinity Capture-MS | FSW = 0.2869
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT4G13170 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0926
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AC) |
AT3G09890 | PredictedGene fusion method | FSW = 0.0508
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454