Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G22480 - ( zinc finger (ZPR1-type) family protein )
40 Proteins interacs with AT5G22480Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07930 | Predictedtwo hybrid | FSW = 0.0239
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G22840 | Predictedtwo hybrid | FSW = 0.0508
| Unknown | CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT4G09720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.0888
| Unknown | RAS-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0189
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G09660 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0122
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT2G16600 | PredictedSynthetic Lethality | FSW = 0.0215
| Unknown | ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G60390 | Predictedtwo hybrid | FSW = 0.0459
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G07940 | Predictedtwo hybrid | FSW = 0.0716
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G13560 | PredictedReconstituted ComplexAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.1241
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT1G11680 | PredictedSynthetic Lethality | FSW = 0.0100
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT1G70730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.2307
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
AT1G53750 | Predictedtwo hybrid | FSW = 0.0226
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT4G31860 | PredictedAffinity Capture-MS | FSW = 0.0545
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT5G11910 | PredictedAffinity Capture-MS | FSW = 0.0744
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT5G15550 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G47770 | Predictedtwo hybrid | FSW = 0.0744
| Unknown | BENZODIAZEPINE RECEPTOR-RELATED |
AT4G10040 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT1G57550 | PredictedAffinity Capture-Western | FSW = 0.1783
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT5G20570 | Predictedinteraction predictiontwo hybridtwo hybrid | FSW = 0.0362
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT3G42830 | Predictedtwo hybrid | FSW = 0.0418
| Unknown | RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G53780 | Predictedtwo hybrid | FSW = 0.0292
| Unknown | ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G01160 | Predictedtwo hybrid | FSW = 0.0149
| Unknown | E-CADHERIN BINDING PROTEIN-RELATED |
AT5G55300 | Predictedtwo hybridtwo hybrid | FSW = 0.0195
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
AT1G33040 | PredictedAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.1782
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT1G34580 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0489
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G60710 | Predictedinterologs mappingAffinity Capture-Western | FSW = 0.2312
| Unknown | ATB2 OXIDOREDUCTASE |
AT2G21730 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT2G46620 | PredictedAffinity Capture-Western | FSW = 0.0909
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT3G24830 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0945
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT4G26510 | PredictedAffinity Capture-Westerntwo hybridAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.1490
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT5G14070 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.2042
| Unknown | ROXY2 ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT5G59490 | PredictedAffinity Capture-MS | FSW = 0.0418
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT2G15790 | Predictedinterologs mapping | FSW = 0.0268
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G25230 | Predictedinterologs mapping | FSW = 0.0160
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G56640 | PredictedSynthetic Lethality | FSW = 0.0369
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT1G02010 | PredictedSynthetic Lethality | FSW = 0.0248
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
AT1G02080 | Predictedtwo hybrid | FSW = 0.0268
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT5G37340 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.4598
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454