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AT5G60390 - ( elongation factor 1-alpha / EF-1-alpha )

160 Proteins interacs with AT5G60390

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G54220	Experimental	FSW = 0.0055	Class A: nucleus Class B: plasma membrane mitochondrion cytosol	SCR (SCARECROW) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT1G07920	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.1005	Class C: plasma membrane nucleus mitochondrion cytosol	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G04120	Predicted Affinity Capture-MS	FSW = 0.0128	Class C: plasma membrane nucleus mitochondrion cytosol	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G07940	Predicted Synthetic Lethality Enriched domain pair Phylogenetic profile method	FSW = 0.2127	Class C: plasma membrane nucleus mitochondrion	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT4G14880	Predicted Affinity Capture-MS	FSW = 0.0071	Class C: plasma membrane nucleus cytosol	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE
AT5G23740	Predicted Affinity Capture-MS	FSW = 0.3960	Class C: plasma membrane nucleus cytosol	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G56070	Predicted Affinity Capture-MS	FSW = 0.0421	Class C: plasma membrane nucleus	LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT5G45420	Predicted Affinity Capture-MS	FSW = 0.3780	Class C: plasma membrane nucleus	MYB FAMILY TRANSCRIPTION FACTOR
AT1G27970	Predicted Affinity Capture-MS	FSW = 0.4495	Class C: plasma membrane nucleus	NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT2G14120	Predicted Affinity Capture-MS	FSW = 0.0850	Class C: plasma membrane mitochondrion cytosol	DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT5G09650	Predicted two hybrid Affinity Capture-MS	FSW = 0.0147	Class C: plasma membrane cytosol	ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT2G20450	Predicted Affinity Capture-MS	FSW = 0.4194	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT3G56190	Predicted Affinity Capture-MS	FSW = 0.3395	Class C: plasma membrane	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT1G22780	Predicted Affinity Capture-MS	FSW = 0.4871	Class C: plasma membrane	PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G11150	Predicted two hybrid	FSW = 0.0091	Class C: plasma membrane	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT4G38920	Predicted two hybrid	FSW = 0.0065	Class C: plasma membrane	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) ATPASE
AT1G65240	Predicted Affinity Capture-MS	FSW = 0.0883	Class C: plasma membrane	ASPARTYL PROTEASE FAMILY PROTEIN
AT1G15210	Predicted Affinity Capture-MS	FSW = 0.5205	Class C: plasma membrane	PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G13560	Predicted Affinity Capture-MS	FSW = 0.1140	Class C: plasma membrane	GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.3257	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT5G23900	Predicted Affinity Capture-MS	FSW = 0.1010	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT5G12370	Predicted Affinity Capture-MS	FSW = 0.0047	Class C: plasma membrane	SEC10 (EXOCYST COMPLEX COMPONENT SEC10)
AT1G13320	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1610	Class C: plasma membrane	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT2G30110	Predicted Affinity Capture-Western	FSW = 0.0025	Class C: plasma membrane	ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE
AT4G24400	Predicted Affinity Capture-MS	FSW = 0.2520	Class C: plasma membrane	CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT2G20580	Predicted Affinity Capture-MS	FSW = 0.0808	Class C: plasma membrane	RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT1G30230	Predicted Affinity Capture-MS Co-crystal Structure	FSW = 0.0583	Class C: plasma membrane	ELONGATION FACTOR 1-BETA / EF-1-BETA
AT4G36860	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.5089	Class C: plasma membrane	ZINC ION BINDING
AT5G25754	Predicted two hybrid	FSW = 0.0067	Class C: plasma membrane	UNKNOWN PROTEIN
AT1G53750	Predicted Affinity Capture-Western	FSW = 0.0323	Class C: plasma membrane	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT5G47010	Predicted Affinity Capture-MS	FSW = 0.0081	Class C: plasma membrane	LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE
AT1G09640	Predicted Affinity Capture-MS	FSW = 0.4298	Class C: plasma membrane	ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT1G57720	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0443	Class C: plasma membrane	ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT1G50310	Predicted Affinity Capture-MS	FSW = 0.2481	Class C: plasma membrane	STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G43370	Predicted Affinity Capture-MS	FSW = 0.4822	Class C: plasma membrane	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G22120	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1377	Class C: plasma membrane	EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT1G07930	Predicted Affinity Capture-MS Enriched domain pair Phylogenetic profile method	FSW = 0.5147	Class C: nucleus mitochondrion	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.0044	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G16950	Predicted Affinity Capture-MS	FSW = 0.4578	Class C: nucleus	LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT4G20360	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.0445	Class C: nucleus	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B) GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR
AT3G04610	Predicted Affinity Capture-MS	FSW = 0.0317	Class C: nucleus	FLK (FLOWERING LOCUS KH DOMAIN) RNA BINDING / NUCLEIC ACID BINDING
AT3G55620	Predicted Affinity Capture-MS	FSW = 0.0055	Class C: nucleus	EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT5G44500	Predicted Affinity Capture-MS	FSW = 0.4081	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT5G54840	Predicted Affinity Capture-MS	FSW = 0.0324	Class C: nucleus	SGP1 GTP BINDING
AT2G40290	Predicted Affinity Capture-MS	FSW = 0.0231	Class C: nucleus	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT5G14170	Predicted two hybrid	FSW = 0.0216	Class C: nucleus	CHC1
AT3G13445	Predicted Affinity Capture-MS	FSW = 0.1407	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G59870	Predicted Affinity Capture-MS	FSW = 0.4831	Class C: nucleus	HTA6 DNA BINDING
AT2G28910	Predicted two hybrid	FSW = 0.0144	Class C: nucleus	CXIP4 (CAX INTERACTING PROTEIN 4) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G54910	Predicted Affinity Capture-MS	FSW = 0.0091	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G72560	Predicted interologs mapping	FSW = 0.0113	Class C: nucleus	PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT2G37470	Predicted Affinity Capture-MS	FSW = 0.4009	Class C: nucleus	HISTONE H2B PUTATIVE
AT2G44950	Predicted Affinity Capture-MS	FSW = 0.0067	Class C: mitochondrion cytosol	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT4G32470	Predicted Affinity Capture-MS	FSW = 0.4802	Class C: mitochondrion	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT2G19860	Predicted Affinity Capture-MS	FSW = 0.4376	Class C: mitochondrion	HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G08950	Predicted Affinity Capture-MS	FSW = 0.4725	Class C: mitochondrion	ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT5G03290	Predicted Affinity Capture-MS	FSW = 0.0054	Class C: mitochondrion	ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT3G61530	Predicted Affinity Capture-MS	FSW = 0.0274	Class C: mitochondrion	PANB2 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
AT4G02930	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.0219	Class C: mitochondrion	ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT3G16050	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2521	Class C: cytosol	A37 PROTEIN HETERODIMERIZATION
AT1G18070	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.0494	Unknown	EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE
AT4G14800	Predicted Affinity Capture-Western	FSW = 0.0236	Unknown	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G19980	Predicted Affinity Capture-MS	FSW = 0.3863	Unknown	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G36880	Predicted Affinity Capture-MS	FSW = 0.0151	Unknown	ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE
AT5G36700	Predicted Affinity Capture-MS	FSW = 0.0082	Unknown	PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1) PHOSPHOGLYCOLATE PHOSPHATASE
AT2G33340	Predicted Co-purification	FSW = 0.0031	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G13050	Predicted Affinity Capture-MS	FSW = 0.4525	Unknown	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
AT3G11630	Predicted Affinity Capture-MS	FSW = 0.2537	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT5G01600	Predicted two hybrid	FSW = 0.0061	Unknown	ATFER1 FERRIC IRON BINDING / IRON ION BINDING
AT3G06040	Predicted Affinity Capture-MS	FSW = 0.4160	Unknown	RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT3G10050	Predicted Affinity Capture-MS	FSW = 0.0329	Unknown	OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE
ATCG00160	Predicted Affinity Capture-MS	FSW = 0.0034	Unknown	CHLOROPLAST RIBOSOMAL PROTEIN S2
AT2G35690	Predicted Affinity Capture-MS	FSW = 0.3861	Unknown	ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT1G72480	Predicted Affinity Capture-MS	FSW = 0.3703	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT2G13650	Predicted Affinity Capture-MS	FSW = 0.4740	Unknown	GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT4G25780	Predicted Affinity Capture-MS	FSW = 0.1746	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G52580	Predicted Affinity Capture-MS	FSW = 0.4606	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT5G41480	Predicted Affinity Capture-MS	FSW = 0.3973	Unknown	GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT1G79750	Predicted Affinity Capture-MS	FSW = 0.0380	Unknown	ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT3G12530	Predicted Affinity Capture-MS	FSW = 0.3510	Unknown	PSF2
AT5G38470	Predicted interologs mapping	FSW = 0.0320	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G47880	Predicted Affinity Capture-MS	FSW = 0.4282	Unknown	ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT4G17190	Predicted Affinity Capture-MS	FSW = 0.0282	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT2G24040	Predicted Affinity Capture-MS	FSW = 0.5157	Unknown	HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0127	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT2G27970	Predicted two hybrid	FSW = 0.0063	Unknown	CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G32730	Predicted two hybrid	FSW = 0.0377	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT3G27530	Predicted two hybrid	FSW = 0.0051	Unknown	GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER
AT5G43010	Predicted two hybrid	FSW = 0.0403	Unknown	RPT4A ATPASE
AT1G75980	Predicted two hybrid	FSW = 0.0366	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SINGLE HYBRID MOTIF (INTERPROIPR011053) HAS 156 BLAST HITS TO 156 PROTEINS IN 78 SPECIES ARCHAE - 4 BACTERIA - 4 METAZOA - 109 FUNGI - 0 PLANTS - 12 VIRUSES - 0 OTHER EUKARYOTES - 27 (SOURCE NCBI BLINK)
AT5G22480	Predicted two hybrid	FSW = 0.0459	Unknown	ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN
AT5G25800	Predicted two hybrid	FSW = 0.0159	Unknown	EXONUCLEASE FAMILY PROTEIN
AT1G03150	Predicted two hybrid	FSW = 0.0105	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN
AT4G18590	Predicted two hybrid	FSW = 0.0164	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S REPLICATION FACTOR A PROTEIN 3 (INTERPROIPR013970) NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G526302) HAS 58 BLAST HITS TO 58 PROTEINS IN 25 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 26 FUNGI - 2 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK)
AT5G03790	Predicted two hybrid	FSW = 0.0061	Unknown	HB51 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT5G46750	Predicted two hybrid	FSW = 0.0241	Unknown	AGD9 (ARF-GAP DOMAIN 9) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT5G49510	Predicted two hybrid	FSW = 0.0082	Unknown	PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G61970	Predicted two hybrid	FSW = 0.0105	Unknown	SIGNAL RECOGNITION PARTICLE-RELATED / SRP-RELATED
AT5G19510	Predicted Affinity Capture-MS	FSW = 0.0276	Unknown	ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2)
AT1G05650	Predicted Affinity Capture-MS	FSW = 0.2537	Unknown	POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE
AT1G11530	Predicted Affinity Capture-MS	FSW = 0.4102	Unknown	ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G20920	Predicted Affinity Capture-MS	FSW = 0.2379	Unknown	DEAD BOX RNA HELICASE PUTATIVE
AT1G33110	Predicted Affinity Capture-MS	FSW = 0.4009	Unknown	MATE EFFLUX FAMILY PROTEIN
AT1G34580	Predicted Affinity Capture-MS	FSW = 0.1268	Unknown	MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G49760	Predicted Affinity Capture-MS	FSW = 0.0236	Unknown	PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G51770	Predicted Affinity Capture-MS	FSW = 0.5115	Unknown	UNKNOWN PROTEIN
AT1G59730	Predicted Affinity Capture-MS	FSW = 0.1325	Unknown	ATH7 (THIOREDOXIN H-TYPE 7)
AT1G62880	Predicted Affinity Capture-MS	FSW = 0.5143	Unknown	CORNICHON FAMILY PROTEIN
AT1G64480	Predicted Affinity Capture-MS	FSW = 0.4744	Unknown	CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G71280	Predicted Affinity Capture-MS	FSW = 0.4512	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G03667	Predicted Affinity Capture-MS	FSW = 0.3726	Unknown	ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT2G17620	Predicted Affinity Capture-MS	FSW = 0.2153	Unknown	CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G19910	Predicted Affinity Capture-MS	FSW = 0.2272	Unknown	RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G43360	Predicted Affinity Capture-MS	FSW = 0.2122	Unknown	BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT2G46860	Predicted Affinity Capture-MS	FSW = 0.4826	Unknown	ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G05960	Predicted Affinity Capture-MS	FSW = 0.3234	Unknown	STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G12690	Predicted Affinity Capture-MS	FSW = 0.4986	Unknown	AGC15 (AGC KINASE 15) KINASE
AT3G19940	Predicted Affinity Capture-MS	FSW = 0.3915	Unknown	SUGAR TRANSPORTER PUTATIVE
AT3G20650	Predicted Affinity Capture-MS	FSW = 0.3524	Unknown	MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G30842	Predicted Affinity Capture-MS	FSW = 0.4288	Unknown	PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G57550	Predicted Affinity Capture-MS	FSW = 0.1015	Unknown	AGK2 (GUANYLATE KINASE) GUANYLATE KINASE
AT3G62770	Predicted Affinity Capture-MS	FSW = 0.3358	Unknown	ATATG18A
AT4G17770	Predicted Affinity Capture-MS	FSW = 0.4822	Unknown	ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT4G25860	Predicted Affinity Capture-MS	FSW = 0.3926	Unknown	ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING
AT4G26230	Predicted Affinity Capture-MS	FSW = 0.2813	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT4G26810	Predicted Affinity Capture-MS	FSW = 0.1893	Unknown	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT4G39330	Predicted Affinity Capture-MS	FSW = 0.3998	Unknown	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G09630	Predicted Affinity Capture-MS	FSW = 0.4389	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT5G19150	Predicted Affinity Capture-MS	FSW = 0.1564	Unknown	CARBOHYDRATE KINASE FAMILY
AT5G19660	Predicted Affinity Capture-MS	FSW = 0.4309	Unknown	S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE
AT5G19820	Predicted Affinity Capture-MS	FSW = 0.3765	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G20060	Predicted Affinity Capture-MS	FSW = 0.0787	Unknown	PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN
AT5G27640	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0878	Unknown	TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.3865	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G57890	Predicted Affinity Capture-MS	FSW = 0.1904	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G16280	Predicted Affinity Capture-MS	FSW = 0.0268	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G16800	Predicted Affinity Capture-MS	FSW = 0.0162	Unknown	TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED
AT1G20696	Predicted Affinity Capture-MS	FSW = 0.4219	Unknown	HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G21570	Predicted Affinity Capture-MS	FSW = 0.0070	Unknown	ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT1G25260	Predicted Affinity Capture-MS	FSW = 0.0058	Unknown	ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G73570	Predicted Affinity Capture-MS	FSW = 0.0029	Unknown	SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED
AT1G76720	Predicted Affinity Capture-MS	FSW = 0.4688	Unknown	GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT2G16740	Predicted Affinity Capture-MS	FSW = 0.1330	Unknown	UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G34750	Predicted Affinity Capture-MS	FSW = 0.0075	Unknown	RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT2G41530	Predicted Affinity Capture-MS	FSW = 0.2473	Unknown	SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT3G23570	Predicted Affinity Capture-MS	FSW = 0.3194	Unknown	DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G52390	Predicted Affinity Capture-MS	FSW = 0.3767	Unknown	TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G53510	Predicted Affinity Capture-MS	FSW = 0.2830	Unknown	ABC TRANSPORTER FAMILY PROTEIN
AT3G59410	Predicted Affinity Capture-MS	FSW = 0.1512	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT3G60240	Predicted Affinity Capture-MS	FSW = 0.0055	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT4G05440	Predicted Affinity Capture-MS	FSW = 0.0082	Unknown	EDA35 (EMBRYO SAC DEVELOPMENT ARREST 35)
AT4G11820	Predicted Affinity Capture-MS	FSW = 0.0129	Unknown	MVA1 ACETYL-COA C-ACETYLTRANSFERASE/ HYDROXYMETHYLGLUTARYL-COA SYNTHASE
AT4G12460	Predicted Affinity Capture-MS	FSW = 0.0036	Unknown	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING
AT4G37760	Predicted Affinity Capture-MS	FSW = 0.0058	Unknown	SQE3 (SQUALENE EPOXIDASE 3) SQUALENE MONOOXYGENASE
AT4G38630	Predicted interologs mapping	FSW = 0.0328	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G02880	Predicted Affinity Capture-MS	FSW = 0.0246	Unknown	UPL4 UBIQUITIN-PROTEIN LIGASE
AT5G09390	Predicted Affinity Capture-MS	FSW = 0.3047	Unknown	CD2-BINDING PROTEIN-RELATED
AT5G25490	Predicted Affinity Capture-MS	FSW = 0.0098	Unknown	ZINC FINGER (RAN-BINDING) FAMILY PROTEIN
AT5G37340	Predicted interologs mapping	FSW = 0.0375	Unknown	ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN
AT5G52210	Predicted Affinity Capture-MS	FSW = 0.0039	Unknown	ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT5G60390 - ( elongation factor 1-alpha / EF-1-alpha )

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