Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G19660 - ( S1P (SITE-1 PROTEASE) endopeptidase/ serine-type endopeptidase )
74 Proteins interacs with AT5G19660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G40950 | ExperimentalReconstituted Complexin vitro | FSW = 0.0297
| Unknown | BZIP17 DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT2G47040 | ExperimentalAffinity Capture-Western | FSW = 0.0125
| Unknown | VGD1 (VANGUARD1) ENZYME INHIBITOR/ PECTINESTERASE |
AT4G12390 | ExperimentalAffinity Capture-Western | FSW = 0.0126
| Unknown | PME1 (PECTIN METHYLESTERASE INHIBITOR 1) ENZYME INHIBITOR/ PECTINESTERASE/ PECTINESTERASE INHIBITOR |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.5852
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT5G61790 | Predictedin vivoAffinity Capture-MS | FSW = 0.0121
| Unknown | CALNEXIN 1 (CNX1) |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.4915
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.5966
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.6027
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.5983
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.5136
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT2G04940 | PredictedAffinity Capture-RNA | FSW = 0.0255
| Unknown | SCRAMBLASE-RELATED |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.4560
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.6564
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G65240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1540
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT3G20550 | PredictedPhenotypic Suppression | FSW = 0.0214
| Unknown | DDL (DAWDLE) |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.4904
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT4G26970 | PredictedAffinity Capture-MS | FSW = 0.1267
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.5676
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.3219
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT5G15450 | PredictedAffinity Capture-RNA | FSW = 0.0154
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G06040 | PredictedAffinity Capture-MS | FSW = 0.5855
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.4309
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.4665
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.6127
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.5521
| Unknown | ZINC ION BINDING |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.5031
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.5423
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT3G13445 | PredictedAffinity Capture-MS | FSW = 0.1761
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT2G13150 | Predictedin vivo | FSW = 0.0416
| Unknown | TRANSCRIPTION FACTOR |
AT1G02670 | PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | DNA REPAIR PROTEIN PUTATIVE |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.6244
| Unknown | HTA6 DNA BINDING |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.4665
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.4108
| Unknown | HISTONE H2B PUTATIVE |
AT5G47630 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.5334
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.5419
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.5854
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.6600
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.4562
| Unknown | PSF2 |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.5748
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT1G05650 | PredictedAffinity Capture-MS | FSW = 0.4231
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.5625
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.1636
| Unknown | UNKNOWN PROTEIN |
AT1G33110 | PredictedAffinity Capture-MS | FSW = 0.6154
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.5928
| Unknown | UNKNOWN PROTEIN |
AT1G59730 | PredictedAffinity Capture-MS | FSW = 0.2344
| Unknown | ATH7 (THIOREDOXIN H-TYPE 7) |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.5949
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.5775
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.5607
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.3030
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.5499
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.5972
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.4286
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.4399
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.4091
| Unknown | ATATG18A |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.6698
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G22753 | PredictedAffinity Capture-MS | FSW = 0.1138
| Unknown | SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ CATALYTIC |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.5040
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.3468
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.4665
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.5948
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.6490
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT1G78970 | PredictedAffinity Capture-MS | FSW = 0.1909
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G01600 | Predictedtwo hybrid | FSW = 0.0041
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2718
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT3G04710 | Predictedinterologs mapping | FSW = 0.0162
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.3815
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.4915
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G61740 | PredictedAffinity Capture-MS | FSW = 0.0034
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G16265 | PredictedAffinity Capture-RNA | FSW = 0.0523
| Unknown | NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT5G09390 | PredictedAffinity Capture-MS | FSW = 0.4484
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1424
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.3553
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.4637
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454