Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G24706 - ( unknown protein )

108 Proteins interacs with AT1G24706
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G01280

Predicted

two hybrid

Affinity Capture-Western

Protein-RNA

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.1268

Unknown

VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT4G29130

Predicted

Affinity Capture-MS

FSW = 0.0368

Unknown

HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT2G01250

Predicted

Affinity Capture-MS

FSW = 0.2072

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT1G07930Predicted

Affinity Capture-MS

FSW = 0.2233

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G24780

Predicted

Affinity Capture-MS

FSW = 0.3992

Unknown

VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING
AT1G50460

Predicted

Affinity Capture-MS

FSW = 0.0439

Unknown

HKL1 (HEXOKINASE-LIKE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT2G29990

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3799

Unknown

NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT2G19860

Predicted

Affinity Capture-MS

FSW = 0.3328

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G19980

Predicted

Affinity Capture-MS

FSW = 0.2299

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G18080

Predicted

two hybrid

FSW = 0.0133

Unknown

ATARCA NUCLEOTIDE BINDING
AT5G24400

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2281

Unknown

EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC
AT2G31170

Predicted

Affinity Capture-MS

FSW = 0.2044

Unknown

SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT4G26970

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3722

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT3G11630

Predicted

Affinity Capture-MS

FSW = 0.1454

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT4G23430

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2884

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT5G53480

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0150

Unknown

IMPORTIN BETA-2 PUTATIVE
AT5G23740

Predicted

Affinity Capture-MS

FSW = 0.2409

Unknown

RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G27970

Predicted

Affinity Capture-MS

FSW = 0.4984

Unknown

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT2G21540

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3738

Unknown

SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT2G37620

Predicted

two hybrid

FSW = 0.0050

Unknown

ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G62300

Predicted

Affinity Capture-MS

FSW = 0.3766

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT3G02870

Predicted

Affinity Capture-MS

FSW = 0.0886

Unknown

VTC4 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ L-GALACTOSE-1-PHOSPHATE PHOSPHATASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE
AT4G22120

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3862

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT4G24400

Predicted

Affinity Capture-MS

FSW = 0.2008

Unknown

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT2G20580

Predicted

Affinity Capture-MS

far western blotting

FSW = 0.0393

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT1G70490Predicted

Affinity Capture-Western

FSW = 0.1809

Unknown

ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT5G60670

Predicted

two hybrid

FSW = 0.0096

Unknown

60S RIBOSOMAL PROTEIN L12 (RPL12C)
AT1G09640

Predicted

Affinity Capture-MS

FSW = 0.2569

Unknown

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT2G35690

Predicted

Affinity Capture-MS

FSW = 0.1727

Unknown

ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT2G47640

Predicted

Affinity Capture-MS

FSW = 0.1375

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT4G26600

Predicted

Affinity Capture-MS

FSW = 0.0893

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT5G37720

Predicted

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0118

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT5G44500

Predicted

Affinity Capture-MS

FSW = 0.3473

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT5G09860

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

interologs mapping

interaction prediction

FSW = 0.0823

Unknown

NUCLEAR MATRIX PROTEIN-RELATED
AT2G34440

Predicted

Affinity Capture-MS

FSW = 0.0270

Unknown

AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR
AT3G18130

Predicted

two hybrid

FSW = 0.0106

Unknown

RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT1G05120

Predicted

Phenotypic Enhancement

FSW = 0.0241

Unknown

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT2G40290

Predicted

Affinity Capture-MS

FSW = 0.0064

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT3G06720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0162

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT5G11170

Predicted

Affinity Capture-Western

Affinity Capture-MS

Co-purification

interologs mapping

Synthetic Lethality

FSW = 0.0292

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G20010

Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT1G11100

Predicted

Affinity Capture-MS

FSW = 0.0378

Unknown

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / ZINC FINGER PROTEIN-RELATED
AT2G41380

Predicted

Affinity Capture-MS

FSW = 0.0086

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT3G20970

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1201

Unknown

NFU4 STRUCTURAL MOLECULE
AT4G10040

Predicted

two hybrid

FSW = 0.0078

Unknown

CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT3G10920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3268

Unknown

MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT4G30990

Predicted

Affinity Capture-MS

FSW = 0.1863

Unknown

BINDING
AT5G57625

Predicted

Affinity Capture-MS

FSW = 0.3378

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT4G33710

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2293

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G08730

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2049

Unknown

PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.3727

Unknown

A37 PROTEIN HETERODIMERIZATION
AT5G41480

Predicted

Affinity Capture-MS

FSW = 0.2136

Unknown

GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT3G12530

Predicted

Affinity Capture-MS

FSW = 0.2246

Unknown

PSF2
AT3G22880

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0652

Unknown

DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G77470

Predicted

two hybrid

FSW = 0.0097

Unknown

REPLICATION FACTOR C 36 KDA PUTATIVE
AT4G34540

Predicted

two hybrid

FSW = 0.0026

Unknown

ISOFLAVONE REDUCTASE FAMILY PROTEIN
AT5G20620Predicted

two hybrid

FSW = 0.0066

Unknown

UBQ4 PROTEIN BINDING
AT5G46540

Predicted

two hybrid

FSW = 0.0124

Unknown

PGP7 (P-GLYCOPROTEIN 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G11530

Predicted

Affinity Capture-MS

FSW = 0.1983

Unknown

ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G20696

Predicted

Affinity Capture-MS

FSW = 0.2223

Unknown

HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G20920

Predicted

Affinity Capture-MS

FSW = 0.1292

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT1G33090

Predicted

Affinity Capture-MS

FSW = 0.1221

Unknown

MATE EFFLUX FAMILY PROTEIN
AT1G55730

Predicted

Affinity Capture-MS

FSW = 0.2566

Unknown

ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT1G58520

Predicted

Affinity Capture-MS

FSW = 0.3883

Unknown

HYDROLASE ACTING ON ESTER BONDS / LIPASE
AT1G63660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1696

Unknown

GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE
AT1G64480

Predicted

Affinity Capture-MS

FSW = 0.3314

Unknown

CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G71280

Predicted

Affinity Capture-MS

FSW = 0.2331

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G01770

Predicted

Affinity Capture-MS

FSW = 0.3553

Unknown

VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER
AT2G03040

Predicted

Affinity Capture-MS

FSW = 0.1908

Unknown

TRANSMEMBRANE PROTEIN-RELATED
AT2G03410

Predicted

Affinity Capture-MS

FSW = 0.1995

Unknown

MO25 FAMILY PROTEIN
AT2G16740

Predicted

Affinity Capture-MS

FSW = 0.1958

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G17620

Predicted

Affinity Capture-MS

FSW = 0.1886

Unknown

CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G19910

Predicted

Affinity Capture-MS

FSW = 0.4768

Unknown

RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0438

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G35390

Predicted

Affinity Capture-MS

FSW = 0.1128

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G41530

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3954

Unknown

SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT2G43360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5039

Unknown

BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT2G46860

Predicted

Affinity Capture-MS

FSW = 0.4379

Unknown

ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G02000

Predicted

Affinity Capture-MS

FSW = 0.0543

Unknown

ROXY1 DISULFIDE OXIDOREDUCTASE
AT3G11900

Predicted

Affinity Capture-MS

FSW = 0.3675

Unknown

ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER
AT3G18850

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1992

Unknown

LPAT5 ACYLTRANSFERASE
AT3G23570

Predicted

Affinity Capture-MS

FSW = 0.2396

Unknown

DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G51880

Predicted

Affinity Capture-MS

FSW = 0.3540

Unknown

HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT3G52390

Predicted

Affinity Capture-MS

FSW = 0.2141

Unknown

TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G53730

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4440

Unknown

HISTONE H4
AT3G54380

Predicted

Affinity Capture-MS

FSW = 0.0323

Unknown

SAC3/GANP FAMILY PROTEIN
AT3G59410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3823

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G17380

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2279

Unknown

MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT4G19645

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2430

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT4G26810

Predicted

Affinity Capture-MS

FSW = 0.2782

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT4G35620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

far western blotting

FSW = 0.3777

Unknown

CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT4G39330

Predicted

Affinity Capture-MS

FSW = 0.2491

Unknown

CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G11200

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

Co-purification

interologs mapping

FSW = 0.0402

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G17000

Predicted

Affinity Capture-MS

FSW = 0.2448

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G19150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3362

Unknown

CARBOHYDRATE KINASE FAMILY
AT5G19660

Predicted

Affinity Capture-MS

FSW = 0.1636

Unknown

S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE
AT5G19820

Predicted

Affinity Capture-MS

FSW = 0.4260

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G20060

Predicted

Affinity Capture-MS

FSW = 0.3086

Unknown

PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN
AT5G24670

Predicted

Affinity Capture-MS

FSW = 0.0747

Unknown

CATALYTIC/ HYDROLASE/ ZINC ION BINDING
AT5G27640

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3264

Unknown

TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT5G41190

Predicted

Affinity Capture-MS

FSW = 0.1679

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G55310

Predicted

Phenotypic Enhancement

FSW = 0.0046

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT2G06040

Predicted

Phenotypic Enhancement

FSW = 0.0417

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK)
AT4G25860

Predicted

Affinity Capture-MS

FSW = 0.2867

Unknown

ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING
AT5G49510

Predicted

Phenotypic Enhancement

FSW = 0.0191

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G02530

Predicted

Affinity Capture-MS

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0142

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G02690

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0102

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT4G15475

Predicted

Phenotypic Enhancement

FSW = 0.0225

Unknown

F-BOX FAMILY PROTEIN (FBL4)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454