Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G24706 - ( unknown protein )
108 Proteins interacs with AT1G24706Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | Predictedtwo hybridAffinity Capture-WesternProtein-RNAReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1268
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT4G29130 | PredictedAffinity Capture-MS | FSW = 0.0368
| Unknown | HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.2072
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.2233
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.3992
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT1G50460 | PredictedAffinity Capture-MS | FSW = 0.0439
| Unknown | HKL1 (HEXOKINASE-LIKE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3799
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.3328
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.2299
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G18080 | Predictedtwo hybrid | FSW = 0.0133
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT5G24400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2281
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.2044
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3722
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.1454
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT4G23430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2884
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G53480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0150
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.2409
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.4984
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3738
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT2G37620 | Predictedtwo hybrid | FSW = 0.0050
| Unknown | ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.3766
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT3G02870 | PredictedAffinity Capture-MS | FSW = 0.0886
| Unknown | VTC4 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ L-GALACTOSE-1-PHOSPHATE PHOSPHATASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3862
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.2008
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT2G20580 | PredictedAffinity Capture-MSfar western blotting | FSW = 0.0393
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G70490 | PredictedAffinity Capture-Western | FSW = 0.1809
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G60670 | Predictedtwo hybrid | FSW = 0.0096
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12C) |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.2569
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.1727
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.1375
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0893
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT5G37720 | PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MSAffinity Capture-Western | FSW = 0.0118
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.3473
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT5G09860 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationinterologs mappinginteraction prediction | FSW = 0.0823
| Unknown | NUCLEAR MATRIX PROTEIN-RELATED |
AT2G34440 | PredictedAffinity Capture-MS | FSW = 0.0270
| Unknown | AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR |
AT3G18130 | Predictedtwo hybrid | FSW = 0.0106
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT1G05120 | PredictedPhenotypic Enhancement | FSW = 0.0241
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0064
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT3G06720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0162
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT5G11170 | PredictedAffinity Capture-WesternAffinity Capture-MSCo-purificationinterologs mappingSynthetic Lethality | FSW = 0.0292
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G20010 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT1G11100 | PredictedAffinity Capture-MS | FSW = 0.0378
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / ZINC FINGER PROTEIN-RELATED |
AT2G41380 | PredictedAffinity Capture-MS | FSW = 0.0086
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT3G20970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1201
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT4G10040 | Predictedtwo hybrid | FSW = 0.0078
| Unknown | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3268
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.1863
| Unknown | BINDING |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.3378
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2293
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G08730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2049
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.3727
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.2136
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.2246
| Unknown | PSF2 |
AT3G22880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0652
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G77470 | Predictedtwo hybrid | FSW = 0.0097
| Unknown | REPLICATION FACTOR C 36 KDA PUTATIVE |
AT4G34540 | Predictedtwo hybrid | FSW = 0.0026
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT5G20620 | Predictedtwo hybrid | FSW = 0.0066
| Unknown | UBQ4 PROTEIN BINDING |
AT5G46540 | Predictedtwo hybrid | FSW = 0.0124
| Unknown | PGP7 (P-GLYCOPROTEIN 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.1983
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.2223
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.1292
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G33090 | PredictedAffinity Capture-MS | FSW = 0.1221
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.2566
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G58520 | PredictedAffinity Capture-MS | FSW = 0.3883
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G63660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1696
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.3314
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.2331
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.3553
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.1908
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.1995
| Unknown | MO25 FAMILY PROTEIN |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.1958
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.1886
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.4768
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0438
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.1128
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3954
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5039
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.4379
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G02000 | PredictedAffinity Capture-MS | FSW = 0.0543
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT3G11900 | PredictedAffinity Capture-MS | FSW = 0.3675
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G18850 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1992
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.2396
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.3540
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.2141
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4440
| Unknown | HISTONE H4 |
AT3G54380 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3823
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G17380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2279
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G19645 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2430
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G26810 | PredictedAffinity Capture-MS | FSW = 0.2782
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationfar western blotting | FSW = 0.3777
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.2491
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G11200 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSSynthetic LethalityCo-purificationinterologs mapping | FSW = 0.0402
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.2448
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3362
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.1636
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.4260
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.3086
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0747
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3264
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.1679
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G55310 | PredictedPhenotypic Enhancement | FSW = 0.0046
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT2G06040 | PredictedPhenotypic Enhancement | FSW = 0.0417
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK) |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.2867
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT5G49510 | PredictedPhenotypic Enhancement | FSW = 0.0191
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G02530 | PredictedAffinity Capture-MSAffinity Capture-WesternSynthetic Lethality | FSW = 0.0142
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G02690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0102
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT4G15475 | PredictedPhenotypic Enhancement | FSW = 0.0225
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454