Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G15475 - ( F-box family protein (FBL4) )
33 Proteins interacs with AT4G15475Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G67500 | PredictedAffinity Capture-MS | FSW = 0.0085
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT4G13940 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) ADENOSYLHOMOCYSTEINASE/ COPPER ION BINDING |
AT5G16630 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0643
| Unknown | RAD4 DAMAGED DNA BINDING |
AT5G63110 | Predictedinterologs mapping | FSW = 0.0319
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT4G35800 | PredictedPhenotypic Enhancement | FSW = 0.0315
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G38480 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0272
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G38740 | PredictedAffinity Capture-MS | FSW = 0.0301
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G23270 | Predictedinterologs mapping | FSW = 0.0139
| Unknown | STP11 (SUGAR TRANSPORTER 11) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G04870 | PredictedGene fusion method | FSW = 0.0889
| Unknown | CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE |
AT3G16980 | PredictedPhenotypic Enhancement | FSW = 0.0493
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT5G09860 | PredictedPhenotypic Enhancement | FSW = 0.0818
| Unknown | NUCLEAR MATRIX PROTEIN-RELATED |
AT1G05120 | Predictedtwo hybridCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationCo-purificationReconstituted Complextwo hybrid | FSW = 0.1129
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G18760 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0486
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G31200 | PredictedAffinity Capture-MS | FSW = 0.0221
| Unknown | ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING |
AT1G16190 | PredictedAffinity Capture-Western | FSW = 0.0772
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G20570 | Predictedtwo hybridReconstituted ComplexAffinity Capture-WesternSynthetic Lethality | FSW = 0.0427
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT5G42190 | Predictedin vivoin vitroAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Westerntwo hybridReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridReconstituted Complextwo hybridAffinity Capture-Westerntwo hybridAffinity Capture-WesternReconstituted Complexinterologs mappinginterologs mappingEnriched domain pairCo-expression | FSW = 0.0193
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G17720 | PredictedSynthetic Lethality | FSW = 0.0324
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT2G22480 | PredictedAffinity Capture-MS | FSW = 0.0392
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT3G07270 | PredictedAffinity Capture-MS | FSW = 0.0512
| Unknown | GTP CYCLOHYDROLASE I |
AT3G50960 | PredictedSynthetic Rescue | FSW = 0.0405
| Unknown | PLP3A (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING |
AT4G05320 | PredictedAffinity Capture-MS | FSW = 0.0291
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT4G06634 | Predictedinterologs mappinginterologs mapping | FSW = 0.0131
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT2G45000 | PredictedPhenotypic Suppression | FSW = 0.0123
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT5G26680 | PredictedSynthetic Lethality | FSW = 0.0100
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G49510 | PredictedSynthetic Lethality | FSW = 0.0255
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G01320 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0044
| Unknown | H2AXA DNA BINDING |
AT5G59140 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0581
| Unknown | SKP1 FAMILY PROTEIN |
AT1G14400 | PredictedPhenotypic Enhancement | FSW = 0.0327
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G24706 | PredictedPhenotypic Enhancement | FSW = 0.0225
| Unknown | UNKNOWN PROTEIN |
AT3G22310 | PredictedGene fusion method | FSW = 0.0084
| Unknown | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING |
AT4G23210 | PredictedGene fusion method | FSW = 0.0889
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454