Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G20570 - ( RBX1 (RING-BOX 1) protein binding )
54 Proteins interacs with AT5G20570Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G58230 | Experimental | FSW = 0.0097
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT5G57360 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0521
| Unknown | ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G10180 | ExperimentalReconstituted Complexin vitro | FSW = 0.0834
| Class D:plastid (p = 0.78) | DET1 (DE-ETIOLATED 1) CATALYTIC |
AT1G02450 | Experimental | FSW = 0.0172
| Unknown | NIMIN1 (NIM1-INTERACTING 1) PROTEIN BINDING |
AT3G13550 | Experimentalmolecular sieving | FSW = 0.0231
| Class D:plastid (p = 0.78) | FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G02570 | Experimentaltwo hybridReconstituted ComplexAffinity Capture-Westernpull downpull downAffinity Capture-Westernaffinity technologytwo hybrid | FSW = 0.0712
| Class D:plastid (p = 0.78) | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT5G46210 | Experimentaltwo hybridtwo hybridpull downAffinity Capture-Westernaffinity technologytwo hybrid | FSW = 0.0874
| Unknown | CUL4 (CULLIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G26830 | Experimentaltwo hybridtwo hybridtwo hybridpull downAffinity Capture-Westernco-fractionationCo-fractionationtwo hybrid | FSW = 0.0744
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G42190 | ExperimentalAffinity Capture-Western | FSW = 0.0512
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G36800 | ExperimentalReconstituted Complexpull downcoimmunoprecipitation | FSW = 0.0205
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT3G62980 | Experimentalpull down | FSW = 0.0908
| Unknown | TIR1 (TRANSPORT INHIBITOR RESPONSE 1) AUXIN BINDING / PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G19000 | Experimentalpull down | FSW = 0.0329
| Unknown | ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING |
AT2G39940 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0556
| Unknown | COI1 (CORONATINE INSENSITIVE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G72930 | ExperimentalReconstituted Complex | FSW = 0.0561
| Unknown | TIR (TOLL/INTERLEUKIN-1 RECEPTOR-LIKE) TRANSMEMBRANE RECEPTOR |
AT1G69670 | Experimentaltwo hybridtwo hybrid | FSW = 0.1073
| Unknown | CUL3B (CULLIN 3B) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G64790 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0177
| Unknown | BINDING |
AT4G04910 | PredictedSynthetic Lethality | FSW = 0.0082
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G17140 | PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PLECKSTRIN HOMOLOGY (INTERPROIPR001849) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PHOSPHOINOSITIDE BINDING (TAIRAT1G480902) HAS 1924 BLAST HITS TO 1182 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 16 METAZOA - 911 FUNGI - 304 PLANTS - 271 VIRUSES - 0 OTHER EUKARYOTES - 422 (SOURCE NCBI BLINK) |
AT1G48090 | Predictedinteraction prediction | FSW = 0.0156
| Unknown | PHOSPHOINOSITIDE BINDING |
AT1G67120 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0074
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
AT3G01610 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0213
| Unknown | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G75950 | PredictedAffinity Capture-Western | FSW = 0.0255
| Unknown | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G35830 | Predictedtwo hybrid | FSW = 0.0097
| Unknown | ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO) |
AT3G12110 | PredictedSynthetic Lethality | FSW = 0.0174
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0198
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G35020 | PredictedSynthetic Lethality | FSW = 0.0137
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT2G20580 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0096
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT3G60330 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0165
| Unknown | AHA7 (ARABIDOPSIS H(+)-ATPASE 7) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM |
AT5G43900 | Predictedinteraction prediction | FSW = 0.0303
| Unknown | MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR |
AT3G57660 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0138
| Unknown | NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING |
AT2G18510 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0054
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G35260 | PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | IDH1 (ISOCITRATE DEHYDROGENASE 1) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT4G30290 | Predictedinteraction prediction | FSW = 0.0414
| Unknown | XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19) HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0108
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G22480 | Predictedinteraction predictiontwo hybridtwo hybrid | FSW = 0.0362
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
AT5G37340 | Predictedtwo hybrid | FSW = 0.0517
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
AT1G02080 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0309
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT1G04160 | PredictedAffinity Capture-MS | FSW = 0.0666
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT1G67190 | PredictedReconstituted Complex | FSW = 0.0113
| Unknown | F-BOX FAMILY PROTEIN |
AT1G78580 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0194
| Unknown | ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G79990 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0262
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G04660 | Predictedtwo hybridinteraction predictionCo-expression | FSW = 0.0062
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G04740 | Predictedtwo hybrid | FSW = 0.0887
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G22480 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0379
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT3G03110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0208
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G11270 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0172
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT3G12760 | PredictedReconstituted Complex | FSW = 0.0843
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEFECTIVE IN CULLIN NEDDYLATION (INTERPROIPR014764) UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL (INTERPROIPR000449) PROTEIN OF UNKNOWN FUNCTION DUF298 (INTERPROIPR005176) UBA-LIKE (INTERPROIPR009060) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G158602) HAS 628 BLAST HITS TO 626 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 408 FUNGI - 99 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 57 (SOURCE NCBI BLINK) |
AT4G05320 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0265
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT4G15475 | Predictedtwo hybridReconstituted ComplexAffinity Capture-WesternSynthetic Lethality | FSW = 0.0427
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT3G27000 | PredictedSynthetic Lethality | FSW = 0.0149
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G56640 | PredictedSynthetic Lethality | FSW = 0.0478
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT5G35980 | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0388
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G39900 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0187
| Unknown | GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR |
AT5G01720 | Predictedinteraction prediction | FSW = 0.0790
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454