Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G20570 - ( RBX1 (RING-BOX 1) protein binding )

54 Proteins interacs with AT5G20570
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G58230

Experimental

FSW = 0.0097

Unknown

MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT5G57360

Experimental

Affinity Capture-Western

affinity technology

FSW = 0.0521

Unknown

ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G10180

Experimental

Reconstituted Complex

in vitro

FSW = 0.0834

Class D:

plastid (p = 0.78)

DET1 (DE-ETIOLATED 1) CATALYTIC
AT1G02450

Experimental

FSW = 0.0172

Unknown

NIMIN1 (NIM1-INTERACTING 1) PROTEIN BINDING
AT3G13550

Experimental

molecular sieving

FSW = 0.0231

Class D:

plastid (p = 0.78)

FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G02570

Experimental

two hybrid

Reconstituted Complex

Affinity Capture-Western

pull down

pull down

Affinity Capture-Western

affinity technology

two hybrid

FSW = 0.0712

Class D:

plastid (p = 0.78)

ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT5G46210

Experimental

two hybrid

two hybrid

pull down

Affinity Capture-Western

affinity technology

two hybrid

FSW = 0.0874

Unknown

CUL4 (CULLIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G26830

Experimental

two hybrid

two hybrid

two hybrid

pull down

Affinity Capture-Western

co-fractionation

Co-fractionation

two hybrid

FSW = 0.0744

Unknown

ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G42190

Experimental

Affinity Capture-Western

FSW = 0.0512

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G36800

Experimental

Reconstituted Complex

pull down

coimmunoprecipitation

FSW = 0.0205

Unknown

RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE
AT3G62980

Experimental

pull down

FSW = 0.0908

Unknown

TIR1 (TRANSPORT INHIBITOR RESPONSE 1) AUXIN BINDING / PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G19000

Experimental

pull down

FSW = 0.0329

Unknown

ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING
AT2G39940

Experimental

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.0556

Unknown

COI1 (CORONATINE INSENSITIVE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G72930

Experimental

Reconstituted Complex

FSW = 0.0561

Unknown

TIR (TOLL/INTERLEUKIN-1 RECEPTOR-LIKE) TRANSMEMBRANE RECEPTOR
AT1G69670

Experimental

two hybrid

two hybrid

FSW = 0.1073

Unknown

CUL3B (CULLIN 3B) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G64790Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0177

Unknown

BINDING
AT4G04910

Predicted

Synthetic Lethality

FSW = 0.0082

Unknown

NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT4G17140Predicted

Affinity Capture-MS

FSW = 0.0327

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PLECKSTRIN HOMOLOGY (INTERPROIPR001849) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PHOSPHOINOSITIDE BINDING (TAIRAT1G480902) HAS 1924 BLAST HITS TO 1182 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 16 METAZOA - 911 FUNGI - 304 PLANTS - 271 VIRUSES - 0 OTHER EUKARYOTES - 422 (SOURCE NCBI BLINK)
AT1G48090Predicted

interaction prediction

FSW = 0.0156

Unknown

PHOSPHOINOSITIDE BINDING
AT1G67120Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0074

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING
AT3G01610

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0213

Unknown

CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G75950

Predicted

Affinity Capture-Western

FSW = 0.0255

Unknown

SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G35830

Predicted

two hybrid

FSW = 0.0097

Unknown

ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO)
AT3G12110

Predicted

Synthetic Lethality

FSW = 0.0174

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0198

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G35020

Predicted

Synthetic Lethality

FSW = 0.0137

Unknown

ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT2G20580

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0096

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT3G60330

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0165

Unknown

AHA7 (ARABIDOPSIS H(+)-ATPASE 7) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM
AT5G43900

Predicted

interaction prediction

FSW = 0.0303

Unknown

MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR
AT3G57660

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0138

Unknown

NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING
AT2G18510

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0054

Unknown

EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G35260

Predicted

Affinity Capture-MS

FSW = 0.0327

Unknown

IDH1 (ISOCITRATE DEHYDROGENASE 1) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT4G30290

Predicted

interaction prediction

FSW = 0.0414

Unknown

XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19) HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0108

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT5G22480

Predicted

interaction prediction

two hybrid

two hybrid

FSW = 0.0362

Unknown

ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN
AT5G37340

Predicted

two hybrid

FSW = 0.0517

Unknown

ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN
AT1G02080Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0309

Unknown

TRANSCRIPTIONAL REGULATOR-RELATED
AT1G04160

Predicted

Affinity Capture-MS

FSW = 0.0666

Unknown

XIB (MYOSIN XI B) MOTOR
AT1G67190

Predicted

Reconstituted Complex

FSW = 0.0113

Unknown

F-BOX FAMILY PROTEIN
AT1G78580

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0194

Unknown

ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G79990

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0262

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT2G04660

Predicted

two hybrid

interaction prediction

Co-expression

FSW = 0.0062

Unknown

APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G04740Predicted

two hybrid

FSW = 0.0887

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT2G22480

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0379

Unknown

PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE
AT3G03110

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0208

Unknown

XPO1B BINDING / PROTEIN TRANSPORTER
AT3G11270

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0172

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT3G12760

Predicted

Reconstituted Complex

FSW = 0.0843

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEFECTIVE IN CULLIN NEDDYLATION (INTERPROIPR014764) UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL (INTERPROIPR000449) PROTEIN OF UNKNOWN FUNCTION DUF298 (INTERPROIPR005176) UBA-LIKE (INTERPROIPR009060) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G158602) HAS 628 BLAST HITS TO 626 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 408 FUNGI - 99 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 57 (SOURCE NCBI BLINK)
AT4G05320

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0265

Unknown

UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING
AT4G15475

Predicted

two hybrid

Reconstituted Complex

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0427

Unknown

F-BOX FAMILY PROTEIN (FBL4)
AT3G27000

Predicted

Synthetic Lethality

FSW = 0.0149

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G56640

Predicted

Synthetic Lethality

FSW = 0.0478

Unknown

EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT5G35980

Predicted

interaction prediction

two hybrid

interologs mapping

FSW = 0.0388

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G39900

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0187

Unknown

GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR
AT5G01720

Predicted

interaction prediction

FSW = 0.0790

Unknown

F-BOX FAMILY PROTEIN (FBL3)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454