Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18510 - ( emb2444 (embryo defective 2444) RNA binding / nucleic acid binding / nucleotide binding )

49 Proteins interacs with AT2G18510
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G09760

Predicted

Affinity Capture-MS

FSW = 0.1239

Class C:

nucleus

U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT5G64270

Predicted

Affinity Capture-MS

FSW = 0.1725

Class C:

nucleus

SPLICING FACTOR PUTATIVE
AT5G12190

Predicted

in vitro

FSW = 0.0919

Class C:

nucleus

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G19840

Predicted

Affinity Capture-MS

in vitro

FSW = 0.0998

Class C:

nucleus

FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT1G04510

Predicted

Co-purification

FSW = 0.0749

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G13370

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0148

Class C:

nucleus

CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G27400

Predicted

two hybrid

two hybrid

FSW = 0.0114

Unknown

60S RIBOSOMAL PROTEIN L17 (RPL17A)
AT4G13940

Predicted

two hybrid

FSW = 0.0295

Unknown

MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) ADENOSYLHOMOCYSTEINASE/ COPPER ION BINDING
AT5G66030

Predicted

two hybrid

FSW = 0.0196

Unknown

ATGRIP PROTEIN BINDING
AT1G74260

Predicted

two hybrid

two hybrid

FSW = 0.0205

Unknown

PUR4 (PURINE BIOSYNTHESIS 4) ATP BINDING / CATALYTIC/ PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE
AT3G55200Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1788

Unknown

SPLICING FACTOR PUTATIVE
AT2G33340

Predicted

Co-purification

FSW = 0.0699

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G38740

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0319

Unknown

ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G16600

Predicted

Affinity Capture-MS

FSW = 0.0455

Unknown

ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT4G29810

Predicted

Gene fusion method

FSW = 0.0237

Unknown

ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE
AT1G48210

Predicted

Gene fusion method

FSW = 0.0174

Unknown

SERINE/THREONINE PROTEIN KINASE PUTATIVE
AT1G25380

Predicted

Gene fusion method

FSW = 0.0367

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G48850

Predicted

Gene fusion method

FSW = 0.0566

Unknown

MITOCHONDRIAL PHOSPHATE TRANSPORTER PUTATIVE
AT2G41380

Predicted

two hybrid

FSW = 0.0048

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT1G71270

Predicted

two hybrid

two hybrid

FSW = 0.0108

Unknown

POK (POKY POLLEN TUBE)
AT5G20570

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0054

Unknown

RBX1 (RING-BOX 1) PROTEIN BINDING
AT3G42830

Predicted

Affinity Capture-MS

FSW = 0.0096

Unknown

RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE
AT3G60830

Predicted

Gene fusion method

FSW = 0.0181

Unknown

ATARP7 (ACTIN-RELATED PROTEIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G71300

Predicted

two hybrid

FSW = 0.0425

Unknown

VPS52/SAC2 FAMILY PROTEIN
AT3G62210

Predicted

two hybrid

FSW = 0.0180

Unknown

EDA32 (EMBRYO SAC DEVELOPMENT ARREST 32)
AT4G21660

Predicted

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

Reconstituted Complex

in vivo

in vivo

Affinity Capture-Western

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

two hybrid

interaction prediction

FSW = 0.2249

Unknown

PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN
AT5G09880

Predicted

two hybrid

FSW = 0.0128

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G55130

Predicted

two hybrid

two hybrid

FSW = 0.0081

Unknown

CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE
AT1G07170

Predicted

in vivo

Affinity Capture-MS

Co-expression

FSW = 0.2288

Unknown

LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G300001) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK)
AT2G02570

Predicted

Affinity Capture-MS

FSW = 0.1323

Unknown

NUCLEIC ACID BINDING
AT2G30000Predicted

in vivo

FSW = 0.1617

Unknown

LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G071702) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK)
AT4G11330

Predicted

two hybrid

FSW = 0.0069

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT4G10070

Predicted

two hybrid

FSW = 0.0140

Unknown

KH DOMAIN-CONTAINING PROTEIN
AT1G14640

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1689

Unknown

SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN
AT1G75430

Predicted

two hybrid

FSW = 0.0513

Unknown

BLH11 (BEL1-LIKE HOMEODOMAIN 11) TRANSCRIPTION FACTOR
AT2G19540

Predicted

Affinity Capture-MS

FSW = 0.0106

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G32600

Predicted

Affinity Capture-MS

FSW = 0.1150

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT3G25230

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0062

Unknown

ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G47120

Predicted

Affinity Capture-MS

FSW = 0.1240

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G55220

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1828

Unknown

SPLICING FACTOR PUTATIVE
AT5G06160

Predicted

Affinity Capture-MS

FSW = 0.1293

Unknown

ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT4G22140

Predicted

two hybrid

FSW = 0.0088

Unknown

DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G67320

Predicted

interaction prediction

two hybrid

FSW = 0.0338

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT2G16940

Predicted

two hybrid

FSW = 0.0205

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G00850

Predicted

two hybrid

Co-expression

FSW = 0.0440

Unknown

GIF3 (GRF1-INTERACTING FACTOR 3) PROTEIN BINDING / TRANSCRIPTION COACTIVATOR
AT1G61040

Predicted

two hybrid

interaction prediction

FSW = 0.0078

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G10940

Predicted

Gene fusion method

FSW = 0.0083

Unknown

SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE
AT1G07880

Predicted

Gene fusion method

FSW = 0.0113

Unknown

ATMPK13 MAP KINASE/ KINASE
AT4G37970

Predicted

Gene fusion method

FSW = 0.0256

Unknown

CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454