Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18510 - ( emb2444 (embryo defective 2444) RNA binding / nucleic acid binding / nucleotide binding )
49 Proteins interacs with AT2G18510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G09760 | PredictedAffinity Capture-MS | FSW = 0.1239
| Class C:nucleus | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT5G64270 | PredictedAffinity Capture-MS | FSW = 0.1725
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
AT5G12190 | Predictedin vitro | FSW = 0.0919
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G19840 | PredictedAffinity Capture-MSin vitro | FSW = 0.0998
| Class C:nucleus | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
AT1G04510 | PredictedCo-purification | FSW = 0.0749
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G13370 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0148
| Class C:nucleus | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G27400 | Predictedtwo hybridtwo hybrid | FSW = 0.0114
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17A) |
AT4G13940 | Predictedtwo hybrid | FSW = 0.0295
| Unknown | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) ADENOSYLHOMOCYSTEINASE/ COPPER ION BINDING |
AT5G66030 | Predictedtwo hybrid | FSW = 0.0196
| Unknown | ATGRIP PROTEIN BINDING |
AT1G74260 | Predictedtwo hybridtwo hybrid | FSW = 0.0205
| Unknown | PUR4 (PURINE BIOSYNTHESIS 4) ATP BINDING / CATALYTIC/ PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE |
AT3G55200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1788
| Unknown | SPLICING FACTOR PUTATIVE |
AT2G33340 | PredictedCo-purification | FSW = 0.0699
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G38740 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0319
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G16600 | PredictedAffinity Capture-MS | FSW = 0.0455
| Unknown | ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT4G29810 | PredictedGene fusion method | FSW = 0.0237
| Unknown | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT1G48210 | PredictedGene fusion method | FSW = 0.0174
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT1G25380 | PredictedGene fusion method | FSW = 0.0367
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G48850 | PredictedGene fusion method | FSW = 0.0566
| Unknown | MITOCHONDRIAL PHOSPHATE TRANSPORTER PUTATIVE |
AT2G41380 | Predictedtwo hybrid | FSW = 0.0048
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G71270 | Predictedtwo hybridtwo hybrid | FSW = 0.0108
| Unknown | POK (POKY POLLEN TUBE) |
AT5G20570 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0054
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT3G42830 | PredictedAffinity Capture-MS | FSW = 0.0096
| Unknown | RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE |
AT3G60830 | PredictedGene fusion method | FSW = 0.0181
| Unknown | ATARP7 (ACTIN-RELATED PROTEIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G71300 | Predictedtwo hybrid | FSW = 0.0425
| Unknown | VPS52/SAC2 FAMILY PROTEIN |
AT3G62210 | Predictedtwo hybrid | FSW = 0.0180
| Unknown | EDA32 (EMBRYO SAC DEVELOPMENT ARREST 32) |
AT4G21660 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridReconstituted Complexin vivoin vivoAffinity Capture-WesternAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridinteraction prediction | FSW = 0.2249
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT5G09880 | Predictedtwo hybrid | FSW = 0.0128
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G55130 | Predictedtwo hybridtwo hybrid | FSW = 0.0081
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
AT1G07170 | Predictedin vivoAffinity Capture-MSCo-expression | FSW = 0.2288
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G300001) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK) |
AT2G02570 | PredictedAffinity Capture-MS | FSW = 0.1323
| Unknown | NUCLEIC ACID BINDING |
AT2G30000 | Predictedin vivo | FSW = 0.1617
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G071702) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK) |
AT4G11330 | Predictedtwo hybrid | FSW = 0.0069
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT4G10070 | Predictedtwo hybrid | FSW = 0.0140
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT1G14640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1689
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
AT1G75430 | Predictedtwo hybrid | FSW = 0.0513
| Unknown | BLH11 (BEL1-LIKE HOMEODOMAIN 11) TRANSCRIPTION FACTOR |
AT2G19540 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G32600 | PredictedAffinity Capture-MS | FSW = 0.1150
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT3G25230 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0062
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G47120 | PredictedAffinity Capture-MS | FSW = 0.1240
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G55220 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1828
| Unknown | SPLICING FACTOR PUTATIVE |
AT5G06160 | PredictedAffinity Capture-MS | FSW = 0.1293
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT4G22140 | Predictedtwo hybrid | FSW = 0.0088
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G67320 | Predictedinteraction predictiontwo hybrid | FSW = 0.0338
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT2G16940 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G00850 | Predictedtwo hybridCo-expression | FSW = 0.0440
| Unknown | GIF3 (GRF1-INTERACTING FACTOR 3) PROTEIN BINDING / TRANSCRIPTION COACTIVATOR |
AT1G61040 | Predictedtwo hybridinteraction prediction | FSW = 0.0078
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G10940 | PredictedGene fusion method | FSW = 0.0083
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
AT1G07880 | PredictedGene fusion method | FSW = 0.0113
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT4G37970 | PredictedGene fusion method | FSW = 0.0256
| Unknown | CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454