Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07170 - ( LOCATED IN cellular_component unknown EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s PHF5-like (InterProIPR005345) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT2G300001) Has 292 Blast hits to 292 proteins in 142 species Archae - 0 Bacteria - 0 Metazoa - 110 Fungi - 75 Plants - 47 Viruses - 0 Other Eukaryotes - 60 (source NCBI BLink) )
14 Proteins interacs with AT1G07170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G64270 | Predictedin vivoAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1720
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G55200 | PredictedAffinity Capture-MSAffinity Capture-MSin vivo | FSW = 0.2411
| Unknown | SPLICING FACTOR PUTATIVE |
AT2G18510 | Predictedin vivoAffinity Capture-MSCo-expression | FSW = 0.2288
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G12190 | Predictedin vivo | FSW = 0.2125
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0144
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G47330 | Predictedin vivo | FSW = 0.1015
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G55220 | PredictedAffinity Capture-MSAffinity Capture-MSin vivoAffinity Capture-MS | FSW = 0.1825
| Unknown | SPLICING FACTOR PUTATIVE |
AT4G21660 | Predictedin vivoAffinity Capture-MSAffinity Capture-MS | FSW = 0.3282
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT3G47120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1162
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G41770 | Predictedsynthetic growth defect | FSW = 0.1036
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0174
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G13210 | Predictedsynthetic growth defect | FSW = 0.0725
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT1G32130 | Predictedtwo hybridinteraction prediction | FSW = 0.0185
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT2G30000 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6957
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G071702) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454