Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07170 - ( LOCATED IN cellular_component unknown EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s PHF5-like (InterProIPR005345) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT2G300001) Has 292 Blast hits to 292 proteins in 142 species Archae - 0 Bacteria - 0 Metazoa - 110 Fungi - 75 Plants - 47 Viruses - 0 Other Eukaryotes - 60 (source NCBI BLink) )

14 Proteins interacs with AT1G07170
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G64270

Predicted

in vivo

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1720

Unknown

SPLICING FACTOR PUTATIVE
AT3G55200Predicted

Affinity Capture-MS

Affinity Capture-MS

in vivo

FSW = 0.2411

Unknown

SPLICING FACTOR PUTATIVE
AT2G18510

Predicted

in vivo

Affinity Capture-MS

Co-expression

FSW = 0.2288

Unknown

EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G12190

Predicted

in vivo

FSW = 0.2125

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0144

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT2G47330

Predicted

in vivo

FSW = 0.1015

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT3G55220

Predicted

Affinity Capture-MS

Affinity Capture-MS

in vivo

Affinity Capture-MS

FSW = 0.1825

Unknown

SPLICING FACTOR PUTATIVE
AT4G21660

Predicted

in vivo

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3282

Unknown

PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN
AT3G47120

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1162

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G41770

Predicted

synthetic growth defect

FSW = 0.1036

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G02530

Predicted

Affinity Capture-MS

FSW = 0.0174

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G13210

Predicted

synthetic growth defect

FSW = 0.0725

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT1G32130

Predicted

two hybrid

interaction prediction

FSW = 0.0185

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT2G30000Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6957

Unknown

LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G071702) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK)

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454