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AT5G64270 - ( splicing factor putative )

82 Proteins interacs with AT5G64270

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G18165	Experimental	FSW = 0.1479	Class A: nucleus Class B: unclear plastid	MOS4 (MODIFIER OF SNC14)
AT5G10450	Predicted Affinity Capture-MS	FSW = 0.0141	Class C: plastid nucleus	GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G09760	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4074	Class C: plastid nucleus	U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT1G09770	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3392	Class C: plastid nucleus	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT5G67500	Predicted Synthetic Lethality	FSW = 0.0207	Class C: plastid	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.0094	Class C: plastid	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G80070	Predicted Affinity Capture-MS	FSW = 0.3593	Class C: plastid	SUS2 (ABNORMAL SUSPENSOR 2)
AT3G52150	Predicted Affinity Capture-MS	FSW = 0.0175	Class C: plastid	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G33340	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.3117	Class C: plastid	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G55200	Predicted in vivo in vivo in vivo Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3215	Class C: plastid	SPLICING FACTOR PUTATIVE
AT5G63110	Predicted Affinity Capture-MS	FSW = 0.0038	Class C: plastid	HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT1G20960	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3675	Class C: nucleus	EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G23600	Predicted two hybrid	FSW = 0.0641	Class C: nucleus	DIENELACTONE HYDROLASE FAMILY PROTEIN
AT2G30260	Predicted Affinity Capture-MS	FSW = 0.0831	Class C: nucleus	U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G08290	Predicted Affinity Capture-MS	FSW = 0.3442	Class C: nucleus	YLS8 CATALYTIC
AT1G16610	Predicted Affinity Capture-MS	FSW = 0.0618	Class C: nucleus	SR45 RNA BINDING / PROTEIN BINDING
AT5G12190	Predicted in vitro	FSW = 0.1348	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G18510	Predicted Affinity Capture-MS	FSW = 0.1725	Class C: nucleus	EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G19840	Predicted Affinity Capture-MS in vitro	FSW = 0.2178	Class C: nucleus	FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT1G74060	Predicted Synthetic Lethality	FSW = 0.0038	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT2G47640	Predicted Affinity Capture-MS	FSW = 0.2414	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT2G23930	Predicted Affinity Capture-MS	FSW = 0.4059	Class C: nucleus	SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)
AT5G27720	Predicted Affinity Capture-MS	FSW = 0.1767	Class C: nucleus	EMB1644 (EMBRYO DEFECTIVE 1644)
AT3G11500	Predicted interaction prediction	FSW = 0.3914	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE
AT1G20580	Predicted Affinity Capture-MS	FSW = 0.4219	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G28060	Predicted Affinity Capture-MS	FSW = 0.2626	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT4G30330	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2979	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT2G18740	Predicted Affinity Capture-MS	FSW = 0.2627	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT4G34430	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Synthetic Lethality Affinity Capture-Western Synthetic Lethality Affinity Capture-MS	FSW = 0.0705	Class C: nucleus	CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G41500	Predicted Affinity Capture-MS	FSW = 0.2639	Class C: nucleus	EMB2776 NUCLEOTIDE BINDING
AT4G30220	Predicted Affinity Capture-MS interaction prediction	FSW = 0.3119	Class C: nucleus	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT1G04510	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.2934	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G62870	Predicted synthetic growth defect Reconstituted Complex Affinity Capture-Western Synthetic Lethality synthetic growth defect Affinity Capture-MS Affinity Capture-Western Reconstituted Complex Affinity Capture-Western Reconstituted Complex Affinity Capture-MS Reconstituted Complex Affinity Capture-Western Co-purification synthetic growth defect Affinity Capture-MS two hybrid interologs mapping Synthetic Lethality	FSW = 0.0205	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G48880	Predicted Synthetic Lethality	FSW = 0.0061	Unknown	PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC
AT1G07780	Predicted synthetic growth defect	FSW = 0.0871	Unknown	PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1) PHOSPHORIBOSYLANTHRANILATE ISOMERASE
AT4G15900	Predicted Affinity Capture-MS	FSW = 0.1631	Unknown	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G48470	Predicted Phenotypic Enhancement	FSW = 0.0171	Unknown	EMB2423 (EMBRYO DEFECTIVE 2423)
AT5G22840	Predicted two hybrid	FSW = 0.0170	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT4G21660	Predicted in vivo Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4543	Unknown	PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN
AT5G47790	Predicted two hybrid in vivo in vitro Co-expression	FSW = 0.0262	Unknown	FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT1G07170	Predicted in vivo Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1720	Unknown	LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G300001) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK)
AT2G02570	Predicted Affinity Capture-MS	FSW = 0.1042	Unknown	NUCLEIC ACID BINDING
AT2G30000	Predicted in vivo	FSW = 0.1452	Unknown	LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G071702) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK)
AT2G43770	Predicted Affinity Capture-MS	FSW = 0.0721	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G13970	Predicted Affinity Capture-MS	FSW = 0.0084	Unknown	APG12B (AUTOPHAGY 12 B)
AT3G55220	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS in vivo in vivo in vivo Synthetic Lethality	FSW = 0.5070	Unknown	SPLICING FACTOR PUTATIVE
AT5G26751	Predicted Affinity Capture-MS	FSW = 0.0100	Unknown	ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G80510	Predicted two hybrid Affinity Capture-Western	FSW = 0.0782	Unknown	AMINO ACID TRANSPORTER FAMILY PROTEIN
AT3G25260	Predicted Synthetic Lethality Affinity Capture-MS	FSW = 0.0322	Unknown	PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT3G45950	Predicted Synthetic Lethality	FSW = 0.0525	Unknown	SPLICING FACTOR-RELATED
AT3G60240	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0679	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT3G62960	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0291	Unknown	GLUTAREDOXIN FAMILY PROTEIN
AT4G21480	Predicted Affinity Capture-Western Reconstituted Complex	FSW = 0.0200	Unknown	CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G16260	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0778	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G19510	Predicted Phenotypic Enhancement Reconstituted Complex two hybrid Affinity Capture-Western	FSW = 0.0842	Unknown	ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2)
AT5G24510	Predicted two hybrid	FSW = 0.0463	Unknown	60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE
AT5G39400	Predicted interologs mapping synthetic growth defect	FSW = 0.0589	Unknown	PTEN1 PHOSPHATASE
AT1G14640	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.4172	Unknown	SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN
AT1G60170	Predicted Affinity Capture-MS	FSW = 0.3307	Unknown	EMB1220 (EMBRYO DEFECTIVE 1220)
AT1G68200	Predicted Affinity Capture-MS	FSW = 0.0150	Unknown	ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT1G80930	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1609	Unknown	MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN
AT2G14880	Predicted Affinity Capture-MS	FSW = 0.0237	Unknown	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT2G32600	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2464	Unknown	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT2G37840	Predicted biochemical	FSW = 0.0055	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT3G03340	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2145	Unknown	UNE6 (UNFERTILIZED EMBRYO SAC 6)
AT3G05760	Predicted Affinity Capture-MS	FSW = 0.1538	Unknown	NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G14090	Predicted Synthetic Lethality	FSW = 0.0254	Unknown	ATEXO70D3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D3) PROTEIN BINDING
AT3G24010	Predicted Affinity Capture-MS	FSW = 0.0087	Unknown	ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G47120	Predicted Affinity Capture-MS	FSW = 0.0568	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G03430	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2395	Unknown	EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G14000	Predicted Affinity Capture-MS Synthetic Lethality	FSW = 0.0032	Unknown	UNKNOWN PROTEIN
AT4G29910	Predicted Affinity Capture-MS	FSW = 0.0165	Unknown	ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT5G06160	Predicted Affinity Capture-MS	FSW = 0.4110	Unknown	ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10400	Predicted Affinity Capture-MS	FSW = 0.0131	Unknown	HISTONE H3
AT5G28740	Predicted Affinity Capture-MS	FSW = 0.2111	Unknown	TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED
AT5G41770	Predicted Affinity Capture-MS Affinity Capture-MS two hybrid	FSW = 0.2226	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G46400	Predicted Affinity Capture-MS	FSW = 0.3130	Unknown	PRP39-2
AT5G66630	Predicted Affinity Capture-MS	FSW = 0.0118	Unknown	DAR5 (DA1-RELATED PROTEIN 5) ZINC ION BINDING
AT4G36690	Predicted two hybrid Reconstituted Complex Synthetic Lethality	FSW = 0.0852	Unknown	ATU2AF65A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G09200	Predicted Affinity Capture-MS	FSW = 0.0073	Unknown	HISTONE H3
AT3G44850	Predicted two hybrid	FSW = 0.0320	Unknown	PROTEIN KINASE-RELATED
AT5G15770	Predicted interaction prediction	FSW = 0.0113	Unknown	ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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