Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G05760 - ( nucleic acid binding / zinc ion binding )
80 Proteins interacs with AT3G05760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3211
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT3G25520 | Predictedtwo hybrid | FSW = 0.0142
| Unknown | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G02840 | PredictedAffinity Capture-MS | FSW = 0.2407
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT1G14010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4764
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G20960 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2014
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.4712
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT1G09760 | PredictedAffinity Capture-MS | FSW = 0.1761
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT5G64270 | PredictedAffinity Capture-MS | FSW = 0.1538
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G54660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1422
| Unknown | GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE |
AT1G16880 | PredictedAffinity Capture-MS | FSW = 0.1332
| Unknown | URIDYLYLTRANSFERASE-RELATED |
AT1G80070 | PredictedAffinity Capture-MS | FSW = 0.1801
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT1G19660 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT1G31190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2467
| Unknown | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
AT5G49030 | PredictedAffinity Capture-MS | FSW = 0.1239
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT2G33340 | PredictedCo-purification | FSW = 0.1513
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G18870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3276
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT1G72710 | PredictedReconstituted Complex | FSW = 0.0214
| Unknown | CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G39740 | Predictedtwo hybridtwo hybrid | FSW = 0.0075
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT4G08690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4974
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G04720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2524
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G10300 | Predictedtwo hybridtwo hybrid | FSW = 0.0123
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G63110 | PredictedAffinity Capture-Western | FSW = 0.1789
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT5G45380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4964
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT4G02230 | Predictedtwo hybridtwo hybrid | FSW = 0.0032
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
AT3G46900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3149
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.0711
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT4G14340 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2575
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G08290 | PredictedAffinity Capture-MS | FSW = 0.3508
| Unknown | YLS8 CATALYTIC |
AT5G59960 | PredictedAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MS | FSW = 0.5644
| Unknown | UNKNOWN PROTEIN |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.1741
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT2G41500 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2236
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT2G43810 | PredictedAffinity Capture-MS | FSW = 0.0834
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT2G03870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0831
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.1201
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G20580 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2575
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G28060 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2350
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT1G04510 | PredictedCo-purification | FSW = 0.1607
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G30810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5148
| Unknown | TRANSCRIPTION FACTOR |
AT1G03330 | PredictedAffinity Capture-MS | FSW = 0.1594
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
AT3G08980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4505
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MS | FSW = 0.0039
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G76400 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT2G38960 | PredictedAffinity Capture-MS | FSW = 0.1919
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.1338
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT5G04170 | Predictedtwo hybrid | FSW = 0.0117
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT5G49310 | Predictedtwo hybrid | FSW = 0.0089
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT5G55760 | Predictedtwo hybridtwo hybrid | FSW = 0.0113
| Unknown | SRT1 (SIRTUIN 1) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT1G02730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2296
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G06790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3783
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G10350 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3553
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G10940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2470
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
AT1G14640 | PredictedAffinity Capture-MS | FSW = 0.2329
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
AT1G21370 | PredictedAffinity Capture-MS | FSW = 0.1350
| Unknown | UNKNOWN PROTEIN |
AT1G27080 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1196
| Unknown | NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.0365
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G43860 | PredictedAffinity Capture-MS | FSW = 0.0637
| Unknown | TRANSCRIPTION FACTOR |
AT1G60170 | PredictedAffinity Capture-MS | FSW = 0.2992
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT1G63660 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT1G74250 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3510
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G79210 | PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4990
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G29940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5538
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G31060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3559
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT1G05830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2575
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT2G29680 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3369
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT3G52590 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2907
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G53880 | PredictedAffinity Capture-MSCo-purification | FSW = 0.3833
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G54630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2702
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT4G00810 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.2973
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT4G03430 | PredictedAffinity Capture-MS | FSW = 0.1843
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G31770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3649
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT5G06160 | PredictedAffinity Capture-MS | FSW = 0.2043
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G16960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4383
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT3G55220 | PredictedAffinity Capture-MS | FSW = 0.2170
| Unknown | SPLICING FACTOR PUTATIVE |
AT4G21660 | PredictedAffinity Capture-MS | FSW = 0.2170
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT4G29910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3613
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT4G31985 | PredictedAffinity Capture-MS | FSW = 0.1794
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.1070
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G59890 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3176
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT5G67510 | Predictedtwo hybrid | FSW = 0.0120
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26B) |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454