Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G59890 - ( ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) actin binding )
57 Proteins interacs with AT5G59890Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MSReconstituted Complextwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridReconstituted ComplexSynthetic RescueSynthetic Lethality | FSW = 0.2874
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT5G63400 | Predictedtwo hybrid | FSW = 0.0022
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT3G55440 | PredictedAffinity Capture-MSin vivo | FSW = 0.0444
| Unknown | TPI (TRIOSEPHOSPHATE ISOMERASE) TRIOSE-PHOSPHATE ISOMERASE |
AT1G14010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3878
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3537
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT1G32470 | Predictedtwo hybrid | FSW = 0.0107
| Unknown | GLYCINE CLEAVAGE SYSTEM H PROTEIN MITOCHONDRIAL PUTATIVE |
AT1G16880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1783
| Unknown | URIDYLYLTRANSFERASE-RELATED |
AT2G37020 | Predictedtwo hybridtwo hybrid | FSW = 0.0422
| Unknown | DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G18870 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridReconstituted Complextwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridReconstituted Complex | FSW = 0.3284
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT3G46000 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3307
| Unknown | ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) ACTIN BINDING |
AT5G59880 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2837
| Unknown | ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) ACTIN BINDING |
AT3G12110 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0220
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G37620 | Predictedtwo hybrid | FSW = 0.0496
| Unknown | ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G25800 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1210
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G45380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3957
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT1G79920 | PredictedAffinity Capture-MStwo hybridReconstituted Complex | FSW = 0.0174
| Unknown | ATP BINDING |
AT3G06110 | Predictedin vivoAffinity Capture-MS | FSW = 0.0267
| Unknown | MKP2 (MAPK PHOSPHATASE 2) MAP KINASE PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE |
AT3G48760 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.2547
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT4G14340 | PredictedAffinity Capture-MS | FSW = 0.2267
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G59960 | PredictedAffinity Capture-MS | FSW = 0.3902
| Unknown | UNKNOWN PROTEIN |
AT1G30810 | PredictedAffinity Capture-MS | FSW = 0.4665
| Unknown | TRANSCRIPTION FACTOR |
AT5G66700 | Predictedtwo hybrid | FSW = 0.0177
| Unknown | HB53 DNA BINDING / TRANSCRIPTION FACTOR |
AT3G08980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4496
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT3G46520 | Predictedtwo hybrid | FSW = 0.0512
| Unknown | ACT12 (ACTIN-12) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G14580 | Predictedtwo hybrid | FSW = 0.0080
| Unknown | ATPRB1 |
AT2G38960 | PredictedAffinity Capture-MS | FSW = 0.1839
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT2G31200 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1980
| Unknown | ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING |
AT2G16700 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3048
| Unknown | ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) ACTIN BINDING |
AT3G46010 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4465
| Unknown | ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) ACTIN BINDING |
AT3G54170 | Predictedtwo hybridtwo hybrid | FSW = 0.0347
| Unknown | ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) PROTEIN BINDING |
AT4G32180 | Predictedtwo hybrid | FSW = 0.0178
| Unknown | ATPANK2 (PANTOTHENATE KINASE 2) PANTOTHENATE KINASE |
AT4G34540 | Predictedtwo hybridin vitrotwo hybridin vivoAffinity Capture-MSAffinity Capture-Western | FSW = 0.0048
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT4G38930 | Predictedtwo hybrid | FSW = 0.0133
| Unknown | UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN |
AT4G34490 | PredictedAffinity Capture-MSin vivo | FSW = 0.0407
| Unknown | ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING |
AT5G42850 | PredictedAffinity Capture-MS | FSW = 0.0444
| Unknown | INVOLVED IN CELL REDOX HOMEOSTASIS LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) PROTEIN OF UNKNOWN FUNCTION DUF953 THIOREDOXIN-LIKE (INTERPROIPR010357) HAS 237 BLAST HITS TO 237 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 174 FUNGI - 29 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 13 (SOURCE NCBI BLINK) |
AT1G63660 | Predictedtwo hybrid | FSW = 0.0579
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT1G74250 | PredictedAffinity Capture-MS | FSW = 0.3108
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3689
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G31060 | PredictedAffinity Capture-MS | FSW = 0.2486
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT4G29910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2627
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0387
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G16960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4365
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G06790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2689
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G29680 | PredictedAffinity Capture-MS | FSW = 0.2758
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3176
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G52590 | PredictedAffinity Capture-MS | FSW = 0.2841
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G53880 | PredictedAffinity Capture-MSCo-purification | FSW = 0.2596
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G00810 | PredictedAffinity Capture-MS | FSW = 0.2597
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT4G31770 | PredictedAffinity Capture-MS | FSW = 0.3062
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT1G60440 | Predictedtwo hybrid | FSW = 0.0984
| Unknown | ATPANK1 (PANTOTHENATE KINASE 1) PANTOTHENATE KINASE |
AT5G52360 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3307
| Unknown | ADF10 (ACTIN DEPOLYMERIZING FACTOR 10) ACTIN BINDING |
AT3G45990 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3307
| Unknown | ACTIN-DEPOLYMERIZING FACTOR PUTATIVE |
AT4G00680 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3307
| Unknown | ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) ACTIN BINDING |
AT4G25590 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3307
| Unknown | ADF7 (ACTIN DEPOLYMERIZING FACTOR 7) ACTIN BINDING |
AT4G34970 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3307
| Unknown | ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) ACTIN BINDING |
AT1G01750 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2164
| Unknown | ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) ACTIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454