Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G00680 - ( ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) actin binding )

11 Proteins interacs with AT4G00680
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G46000

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9476

Unknown

ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) ACTIN BINDING
AT5G59880

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7878

Unknown

ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) ACTIN BINDING
AT2G31200

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4528

Unknown

ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING
AT2G16700

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8889

Unknown

ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) ACTIN BINDING
AT3G46010

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6857

Unknown

ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) ACTIN BINDING
AT1G01750

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.5581

Unknown

ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) ACTIN BINDING
AT4G25590

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.9476

Unknown

ADF7 (ACTIN DEPOLYMERIZING FACTOR 7) ACTIN BINDING
AT5G52360

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9476

Unknown

ADF10 (ACTIN DEPOLYMERIZING FACTOR 10) ACTIN BINDING
AT5G59890

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3307

Unknown

ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING
AT3G45990

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9476

Unknown

ACTIN-DEPOLYMERIZING FACTOR PUTATIVE
AT4G34970

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.9476

Unknown

ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) ACTIN BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454