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AT3G12110 - ( ACT11 (actin-11) structural constituent of cytoskeleton )

129 Proteins interacs with AT3G12110

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G09810	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.1948	Class C: plasma membrane mitochondrion	ACT7 (ACTIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G07940	Predicted Dosage Growth Defect interaction prediction	FSW = 0.0251	Class C: plasma membrane mitochondrion	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G49240	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.5265	Class C: plasma membrane	ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G76030	Predicted Affinity Capture-Western	FSW = 0.0111	Class C: plasma membrane	VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT
AT3G18780	Predicted Gene fusion method Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.1940	Class C: plasma membrane	ACT2 (ACTIN 2) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G02520	Predicted Dosage Growth Defect	FSW = 0.0418	Class C: plasma membrane	GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G38480	Predicted Dosage Growth Defect	FSW = 0.0220	Class C: plasma membrane	GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G34460	Predicted Gene fusion method	FSW = 0.0477	Class C: plasma membrane	AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G27710	Predicted interaction prediction interologs mapping	FSW = 0.0043	Class C: plasma membrane	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT2G37620	Predicted Gene fusion method Phylogenetic profile method	FSW = 0.1946	Class C: plasma membrane	ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G11890	Predicted Phenotypic Enhancement	FSW = 0.0471	Class C: plasma membrane	SEC22 TRANSPORTER
AT3G51460	Predicted interaction prediction	FSW = 0.0140	Class C: plasma membrane	RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE
AT3G57220	Predicted Synthetic Lethality	FSW = 0.0078	Class C: plasma membrane	UDP-GLCNACDOLICHOL PHOSPHATE N-ACETYLGLUCOSAMINE-1-PHOSPHATE TRANSFERASE PUTATIVE
AT3G18190	Predicted Phenotypic Suppression interaction prediction	FSW = 0.0271	Class C: plasma membrane	CHAPERONIN PUTATIVE
AT5G52640	Predicted two hybrid	FSW = 0.0302	Class C: plasma membrane	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G12370	Predicted Affinity Capture-MS	FSW = 0.0212	Class C: plasma membrane	SEC10 (EXOCYST COMPLEX COMPONENT SEC10)
AT3G43810	Predicted Affinity Capture-MS	FSW = 0.0236	Class C: plasma membrane	CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT5G19330	Predicted interaction prediction Affinity Capture-Western	FSW = 0.0231	Class C: plasma membrane	ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN
AT1G54080	Predicted two hybrid	FSW = 0.0036	Class C: plasma membrane	OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT4G36400	Predicted interaction prediction Reconstituted Complex Reconstituted Complex Reconstituted Complex Affinity Capture-Western	FSW = 0.0166	Class C: mitochondrion	FAD LINKED OXIDASE FAMILY PROTEIN
AT3G46520	Predicted Gene fusion method Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.1829	Class C: mitochondrion	ACT12 (ACTIN-12) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G59370	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.2002	Class C: mitochondrion	ACT4 (ACTIN 4) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G42570	Predicted in vivo	FSW = 0.0080	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR PROTEIN TRANSPORT LOCATED IN ENDOPLASMIC RETICULUM PLASMA MEMBRANE EXPRESSED IN 26 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S B-CELL RECEPTOR-ASSOCIATED 31-LIKE (INTERPROIPR008417) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G119051) HAS 311 BLAST HITS TO 268 PROTEINS IN 81 SPECIES ARCHAE - 2 BACTERIA - 2 METAZOA - 134 FUNGI - 41 PLANTS - 73 VIRUSES - 0 OTHER EUKARYOTES - 59 (SOURCE NCBI BLINK)
AT1G18070	Predicted Affinity Capture-Western	FSW = 0.0204	Unknown	EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE
AT3G22845	Predicted two hybrid	FSW = 0.0075	Unknown	EMP24/GP25L/P24 PROTEIN-RELATED
AT5G55400	Predicted synthetic growth defect synthetic growth defect Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue synthetic growth defect Affinity Capture-Western Reconstituted Complex Affinity Capture-MS Affinity Capture-Western Reconstituted Complex Synthetic Lethality Affinity Capture-MS Co-purification Phenotypic Suppression	FSW = 0.0476	Unknown	FIMBRIN-LIKE PROTEIN PUTATIVE
AT5G58060	Predicted Affinity Capture-Western	FSW = 0.0230	Unknown	YKT61
AT1G74560	Predicted two hybrid	FSW = 0.0015	Unknown	NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING
AT5G67630	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0828	Unknown	DNA HELICASE PUTATIVE
AT5G22330	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1168	Unknown	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING
AT1G73820	Predicted Synthetic Lethality	FSW = 0.0151	Unknown	SSU72-LIKE FAMILY PROTEIN
AT2G28190	Predicted Phenotypic Suppression	FSW = 0.0381	Unknown	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT2G42170	Predicted Phylogenetic profile method	FSW = 0.1877	Unknown	ACTIN PUTATIVE
AT3G53750	Predicted Phenotypic Suppression Gene fusion method Gene neighbors method Phylogenetic profile method	FSW = 0.2245	Unknown	ACT3 (ACTIN 3) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G44680	Predicted Phenotypic Enhancement	FSW = 0.0574	Unknown	CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT1G56170	Predicted two hybrid	FSW = 0.0424	Unknown	NF-YC2 (NUCLEAR FACTOR Y SUBUNIT C2) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.0080	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G12810	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1046	Unknown	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G43810	Predicted Phenotypic Enhancement	FSW = 0.0403	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G19120	Predicted Phenotypic Enhancement	FSW = 0.0375	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G13940	Predicted Phenotypic Enhancement	FSW = 0.0145	Unknown	DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G27720	Predicted Synthetic Lethality	FSW = 0.0082	Unknown	EMB1644 (EMBRYO DEFECTIVE 1644)
AT4G10710	Predicted interaction prediction	FSW = 0.0288	Unknown	SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT3G57300	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS	FSW = 0.0314	Unknown	INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G18450	Predicted Phylogenetic profile method Co-expression	FSW = 0.1904	Unknown	ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G05520	Predicted Affinity Capture-MS	FSW = 0.0954	Unknown	F-ACTIN CAPPING PROTEIN ALPHA SUBUNIT FAMILY PROTEIN
AT5G07630	Predicted Synthetic Lethality	FSW = 0.0171	Unknown	LIPID TRANSPORTER
AT1G03190	Predicted Synthetic Lethality	FSW = 0.0486	Unknown	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT2G47210	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0649	Unknown	MYB FAMILY TRANSCRIPTION FACTOR
AT2G27470	Predicted Phenotypic Enhancement	FSW = 0.0208	Unknown	NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT3G19210	Predicted Phenotypic Enhancement	FSW = 0.0108	Unknown	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G71270	Predicted Synthetic Rescue Synthetic Rescue	FSW = 0.0114	Unknown	POK (POKY POLLEN TUBE)
AT5G66020	Predicted Synthetic Rescue	FSW = 0.0344	Unknown	ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT2G31200	Predicted interaction prediction two hybrid two hybrid two hybrid two hybrid Synthetic Lethality synthetic growth defect biochemical Co-purification co-fractionation Co-fractionation interologs mapping interaction prediction	FSW = 0.0990	Unknown	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING
AT3G46010	Predicted two hybrid	FSW = 0.0477	Unknown	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) ACTIN BINDING
AT1G72550	Predicted Synthetic Lethality	FSW = 0.0246	Unknown	TRNA SYNTHETASE BETA SUBUNIT FAMILY PROTEIN
AT2G19770	Predicted interaction prediction two hybrid two hybrid two hybrid Phenotypic Suppression Synthetic Lethality Phenotypic Enhancement Affinity Capture-Western Reconstituted Complex Synthetic Rescue biochemical interologs mapping Enriched domain pair Co-expression	FSW = 0.0247	Unknown	PRF5 (PROFILIN5) ACTIN BINDING / ACTIN MONOMER BINDING
AT3G20050	Predicted synthetic growth defect interologs mapping	FSW = 0.0231	Unknown	ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT2G42090	Predicted Phylogenetic profile method Co-expression	FSW = 0.1944	Unknown	ACT9 (ACTIN 9) ATP BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G42100	Predicted Phylogenetic profile method Co-expression	FSW = 0.1944	Unknown	ACTIN PUTATIVE
AT3G60830	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.1877	Unknown	ATARP7 (ACTIN-RELATED PROTEIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G20570	Predicted Synthetic Lethality	FSW = 0.0174	Unknown	RBX1 (RING-BOX 1) PROTEIN BINDING
AT4G26840	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0131	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT5G63860	Predicted Affinity Capture-MS	FSW = 0.0200	Unknown	UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT3G01320	Predicted two hybrid	FSW = 0.0053	Unknown	SNL1 (SIN3-LIKE 1)
AT5G57320	Predicted in vitro in vitro	FSW = 0.0078	Unknown	VILLIN PUTATIVE
AT5G59890	Predicted two hybrid Affinity Capture-Western	FSW = 0.0220	Unknown	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING
AT1G04160	Predicted Reconstituted Complex Affinity Capture-Western Reconstituted Complex interologs mapping	FSW = 0.0936	Unknown	XIB (MYOSIN XI B) MOTOR
AT1G17140	Predicted Co-purification interologs mapping Synthetic Rescue	FSW = 0.0530	Unknown	TROPOMYOSIN-RELATED
AT1G17760	Predicted Synthetic Lethality Affinity Capture-MS interaction prediction	FSW = 0.0090	Unknown	CSTF77 PROTEIN BINDING
AT1G49980	Predicted Phenotypic Enhancement	FSW = 0.0087	Unknown	DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING
AT1G54390	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.0324	Unknown	PHD FINGER PROTEIN-RELATED
AT1G68310	Predicted Synthetic Lethality	FSW = 0.0085	Unknown	VACUOLAR SORTING SIGNAL BINDING
AT1G69070	Predicted Synthetic Lethality	FSW = 0.0151	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT1G69640	Predicted Synthetic Rescue	FSW = 0.0206	Unknown	SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE
AT2G17980	Predicted Synthetic Lethality	FSW = 0.0376	Unknown	ATSLY1 PROTEIN TRANSPORTER
AT2G33240	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Reconstituted Complex	FSW = 0.0663	Unknown	XID MOTOR/ PROTEIN BINDING
AT2G37550	Predicted Reconstituted Complex	FSW = 0.0227	Unknown	AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT2G43650	Predicted Synthetic Lethality	FSW = 0.0218	Unknown	EMB2777 (EMBRYO DEFECTIVE 2777)
AT3G06460	Predicted Synthetic Rescue	FSW = 0.0216	Unknown	GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT1G03150	Predicted Synthetic Rescue	FSW = 0.0322	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN
AT1G24290	Predicted Affinity Capture-MS	FSW = 0.0116	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G29990	Predicted Phenotypic Enhancement	FSW = 0.0716	Unknown	PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G49490	Predicted two hybrid two hybrid Affinity Capture-Western	FSW = 0.0477	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN
AT1G52740	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1080	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G71790	Predicted Synthetic Lethality interaction prediction Co-expression	FSW = 0.0806	Unknown	F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN
AT2G04520	Predicted Reconstituted Complex	FSW = 0.0180	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 1A PUTATIVE / EIF-1A PUTATIVE / EIF-4C PUTATIVE
AT2G07690	Predicted Affinity Capture-MS	FSW = 0.0457	Unknown	MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT2G18290	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0185	Unknown	ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY
AT2G22480	Predicted Affinity Capture-Western	FSW = 0.0111	Unknown	PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE
AT2G34970	Predicted Affinity Capture-MS	FSW = 0.0118	Unknown	EIF4-GAMMA/EIF5/EIF2-EPSILON DOMAIN-CONTAINING PROTEIN
AT3G04710	Predicted Phenotypic Enhancement	FSW = 0.0232	Unknown	ANKYRIN REPEAT FAMILY PROTEIN
AT3G12380	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0650	Unknown	ATARP5 (ACTIN-RELATED PROTEIN 5) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G18060	Predicted two hybrid two hybrid two hybrid Synthetic Lethality Reconstituted Complex synthetic growth defect interologs mapping interaction prediction	FSW = 0.0622	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G20800	Predicted Phenotypic Enhancement	FSW = 0.0466	Unknown	RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT3G22142	Predicted two hybrid two hybrid interologs mapping interologs mapping far western blotting Reconstituted Complex	FSW = 0.0892	Unknown	STRUCTURAL CONSTITUENT OF CELL WALL
AT3G26500	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0258	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN
AT4G11820	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0159	Unknown	MVA1 ACETYL-COA C-ACETYLTRANSFERASE/ HYDROXYMETHYLGLUTARYL-COA SYNTHASE
AT4G18905	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0395	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G34490	Predicted interaction prediction two hybrid Affinity Capture-MS two hybrid Affinity Capture-MS Affinity Capture-Western Reconstituted Complex Affinity Capture-MS Reconstituted Complex Affinity Capture-Western interologs mapping	FSW = 0.0763	Unknown	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING
AT5G02310	Predicted Phenotypic Enhancement	FSW = 0.0462	Unknown	PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE
AT5G09350	Predicted synthetic growth defect	FSW = 0.0518	Unknown	PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT5G09740	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification interaction prediction	FSW = 0.0873	Unknown	HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10260	Predicted Phenotypic Enhancement	FSW = 0.0900	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G45600	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1192	Unknown	GAS41 PROTEIN BINDING
AT5G49510	Predicted Phenotypic Enhancement	FSW = 0.0414	Unknown	PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G59140	Predicted Phenotypic Enhancement	FSW = 0.0097	Unknown	SKP1 FAMILY PROTEIN
AT5G61770	Predicted Phenotypic Enhancement	FSW = 0.0265	Unknown	PPAN (PETER PAN-LIKE PROTEIN)
AT3G13230	Predicted Synthetic Lethality	FSW = 0.0149	Unknown	RNA BINDING
AT3G54380	Predicted Synthetic Rescue Synthetic Rescue	FSW = 0.0708	Unknown	SAC3/GANP FAMILY PROTEIN
AT4G01400	Predicted Synthetic Lethality	FSW = 0.0370	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COG4 TRANSPORT (INTERPROIPR013167) PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G461001) HAS 11639 BLAST HITS TO 3936 PROTEINS IN 180 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 206 FUNGI - 141 PLANTS - 11004 VIRUSES - 0 OTHER EUKARYOTES - 286 (SOURCE NCBI BLINK)
AT4G04210	Predicted Phenotypic Enhancement	FSW = 0.0414	Unknown	PUX4 PROTEIN BINDING
AT4G37760	Predicted Synthetic Lethality	FSW = 0.0071	Unknown	SQE3 (SQUALENE EPOXIDASE 3) SQUALENE MONOOXYGENASE
AT5G10480	Predicted Synthetic Lethality	FSW = 0.0283	Unknown	PAS2 (PASTICCINO 2) ENOYL-COA HYDRATASE/ PROTEIN TYROSINE PHOSPHATASE
AT5G43500	Predicted Affinity Capture-MS	FSW = 0.0507	Unknown	ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G49010	Predicted Synthetic Lethality	FSW = 0.0181	Unknown	SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)
AT5G66100	Predicted interologs mapping interaction prediction	FSW = 0.0576	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT5G35700	Predicted interaction prediction interologs mapping Co-expression	FSW = 0.0687	Unknown	FIM2 (FIMBRIN-LIKE PROTEIN 2) ACTIN BINDING
AT3G19020	Predicted interaction prediction interologs mapping	FSW = 0.0529	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN
AT5G10660	Predicted interologs mapping interaction prediction	FSW = 0.0441	Unknown	CALMODULIN-BINDING PROTEIN-RELATED
AT3G44340	Predicted two hybrid Enriched domain pair Co-expression	FSW = 0.0097	Unknown	CEF (CLONE EIGHTY-FOUR) PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT2G26590	Predicted two hybrid	FSW = 0.0135	Unknown	ADHESION REGULATING MOLECULE FAMILY
AT5G35430	Predicted two hybrid	FSW = 0.0071	Unknown	BINDING
AT1G18660	Predicted two hybrid	FSW = 0.0042	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT3G46940	Predicted two hybrid	FSW = 0.0058	Unknown	DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE FAMILY
AT1G11730	Predicted two hybrid	FSW = 0.0173	Unknown	GALACTOSYLTRANSFERASE FAMILY PROTEIN
AT1G47840	Predicted interaction prediction	FSW = 0.0087	Unknown	HXK3 (HEXOKINASE 3) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G53710	Predicted interaction prediction Co-expression	FSW = 0.0113	Unknown	AGD6 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT3G27000	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.1642	Unknown	ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT3G12110 - ( ACT11 (actin-11) structural constituent of cytoskeleton )

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