Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G67630 - ( DNA helicase putative )
77 Proteins interacs with AT5G67630| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G02090
   | PredictedAffinity Capture-MS | FSW = 0.0114
| Class C:plastidnucleus | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
| AT5G63310
| PredictedAffinity Capture-MS | FSW = 0.0067
| Class C:plastidnucleus | NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING |
| AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.1425
| Class C:plastidnucleus | HISTONE H4 |
| AT5G22330
| Predictedtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-WesternCo-purificationReconstituted ComplexCo-crystal Structurebiochemicalinteraction predictionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3546
| Class C:plastidnucleus | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
| AT2G30860
| PredictedAffinity Capture-MS | FSW = 0.0300
| Class C:plastid | ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE PEROXIDASE/ GLUTATHIONE TRANSFERASE |
| AT5G03290
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0792
| Class C:plastid | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
| AT1G29900
| PredictedAffinity Capture-MS | FSW = 0.0788
| Class C:plastid | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
| AT2G45300
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1172
| Class C:plastid | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
| AT3G04770
| PredictedAffinity Capture-MS | FSW = 0.0330
| Class C:plastid | RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G49830
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4219
| Class C:plastid | DNA HELICASE-RELATED |
| AT3G10050
| PredictedAffinity Capture-MS | FSW = 0.0792
| Class C:plastid | OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE |
| AT4G14960
| PredictedAffinity Capture-MS | FSW = 0.0513
| Class C:nucleus | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT1G56070
| PredictedAffinity Capture-MS | FSW = 0.0490
| Class C:nucleus | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
| AT2G33730
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0370
| Class C:nucleus | DEAD BOX RNA HELICASE PUTATIVE |
| AT2G30620
| PredictedPhenotypic Enhancement | FSW = 0.0600
| Class C:nucleus | HISTONE H12 |
| AT5G23740
| PredictedAffinity Capture-MS | FSW = 0.0052
| Class C:nucleus | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G12250
| PredictedAffinity Capture-MS | FSW = 0.0941
| Class C:nucleus | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT4G26720
| PredictedPhenotypic Suppression | FSW = 0.0124
| Class C:nucleus | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT2G44680
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0485
| Class C:nucleus | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
| AT1G17790
| PredictedAffinity Capture-MS | FSW = 0.1066
| Class C:nucleus | DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN |
| AT4G02070
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0182
| Class C:nucleus | MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING |
| AT3G12810
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0985
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT3G05060
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0218
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT3G06720
| PredictedAffinity Capture-MS | FSW = 0.0172
| Class C:nucleus | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
| AT3G57300
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1016
| Class C:nucleus | INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT1G18450
| Predictedin vivoCo-expression | FSW = 0.0365
| Class C:nucleus | ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT3G17609
| Predictedtwo hybridin vivoAffinity Capture-Western | FSW = 0.0167
| Class C:nucleus | HYH (HY5-HOMOLOG) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G13445
| PredictedAffinity Capture-WesternReconstituted ComplexSynthetic Lethality | FSW = 0.0294
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT3G18130
| PredictedAffinity Capture-MS | FSW = 0.0055
| Class C:nucleus | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
| AT2G29570
| Predictedin vitroCo-expression | FSW = 0.0059
| Class C:nucleus | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
| AT2G36740
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0916
| Class C:nucleus | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G47210
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1208
| Class C:nucleus | MYB FAMILY TRANSCRIPTION FACTOR |
| AT1G64790 | PredictedAffinity Capture-MS | FSW = 0.1620
| Unknown | BINDING |
| AT3G22110
| PredictedPhenotypic Enhancement | FSW = 0.0277
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT5G19740
| PredictedPhenotypic Enhancement | FSW = 0.0372
| Unknown | PEPTIDASE M28 FAMILY PROTEIN |
| AT5G13710
| PredictedPhenotypic Enhancement | FSW = 0.0281
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
| AT4G38495
| PredictedAffinity Capture-MS | FSW = 0.1240
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YL1 NUCLEAR C-TERMINAL (INTERPROIPR013272) HAS 189 BLAST HITS TO 189 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 80 FUNGI - 83 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK) |
| AT5G56030
| PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
| AT4G38740
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0037
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| AT3G12110
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0828
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT1G11890
| PredictedPhenotypic Enhancement | FSW = 0.0441
| Unknown | SEC22 TRANSPORTER |
| AT1G07670
| PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | CALCIUM-TRANSPORTING ATPASE |
| AT5G19990
| PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT5G19330
| PredictedPhenotypic Enhancement | FSW = 0.0281
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
| AT2G44950
| PredictedPhenotypic Suppression | FSW = 0.0701
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
| AT5G26710
| PredictedAffinity Capture-MS | FSW = 0.0435
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
| AT1G79750
| PredictedAffinity Capture-MS | FSW = 0.1521
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
| AT4G30800
| PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
| AT2G45790
| PredictedAffinity Capture-MS | FSW = 0.1095
| Unknown | PMM (PHOSPHOMANNOMUTASE) PHOSPHOMANNOMUTASE |
| AT5G63860
| PredictedAffinity Capture-MS | FSW = 0.0665
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| AT1G44120
| PredictedPhenotypic Enhancement | FSW = 0.0261
| Unknown | C2 DOMAIN-CONTAINING PROTEIN / ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
| AT3G11910
| PredictedAffinity Capture-MS | FSW = 0.0350
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT5G06600
| PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT1G02080 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0412
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
| AT1G29940 | PredictedAffinity Capture-MS | FSW = 0.0659
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
| AT1G60170
| Predictedtwo hybrid | FSW = 0.0093
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
| AT1G64550
| PredictedAffinity Capture-MS | FSW = 0.0551
| Unknown | ATGCN3 TRANSPORTER |
| AT1G67500
| PredictedPhenotypic Enhancement | FSW = 0.0082
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
| AT2G39770
| PredictedAffinity Capture-MS | FSW = 0.0913
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
| AT3G12380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1294
| Unknown | ATARP5 (ACTIN-RELATED PROTEIN 5) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT3G18740
| PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
| AT3G18860
| PredictedPhenotypic Enhancement | FSW = 0.0663
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G24090
| PredictedAffinity Capture-MS | FSW = 0.0877
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
| AT4G10320
| PredictedAffinity Capture-MS | FSW = 0.0339
| Unknown | ISOLEUCYL-TRNA SYNTHETASE PUTATIVE / ISOLEUCINE--TRNA LIGASE PUTATIVE |
| AT4G27640
| PredictedAffinity Capture-MS | FSW = 0.0647
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
| AT5G10260
| PredictedPhenotypic Enhancement | FSW = 0.0722
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
| AT5G43500
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0917
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
| AT5G61770
| PredictedPhenotypic Enhancement | FSW = 0.0202
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
| AT1G32750
| PredictedAffinity Capture-MS | FSW = 0.0970
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
| AT1G52740
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0989
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
| AT1G80500
| PredictedAffinity Capture-MS | FSW = 0.0033
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
| AT2G17380
| PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | AP19 PROTEIN BINDING / PROTEIN TRANSPORTER |
| AT2G27170
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0412
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
| AT5G45600
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1216
| Unknown | GAS41 PROTEIN BINDING |
| AT5G65980
| PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | AUXIN EFFLUX CARRIER FAMILY PROTEIN |
| AT1G03760
| Predictedin vivo | FSW = 0.0710
| Unknown | PREFOLDIN SUBUNIT FAMILY PROTEIN |
| AT5G50900
| PredictedPhenotypic Enhancement | FSW = 0.0222
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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