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AT5G19990 - ( RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPase )

110 Proteins interacs with AT5G19990

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G25490	Experimental biochemical	FSW = 0.1658	Class D: nucleus (p = 0.78) cytosol (p = 0.67)	EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.0087	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT3G22630	Predicted Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.2145	Class C: plasma membrane	PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G07890	Predicted Affinity Capture-MS	FSW = 0.0053	Class C: plasma membrane	APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE
AT3G01610	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0029	Class C: plasma membrane	CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G48750	Predicted Co-purification	FSW = 0.0265	Class C: plasma membrane	CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G02500	Predicted Affinity Capture-MS	FSW = 0.0187	Class C: plasma membrane	SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE
AT1G45000	Predicted Affinity Capture-MS co-fractionation Co-fractionation two hybrid Phylogenetic profile method	FSW = 0.3760	Class C: plasma membrane	26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE
AT4G35020	Predicted Phenotypic Suppression	FSW = 0.0070	Class C: plasma membrane	ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT1G53750	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Phylogenetic profile method	FSW = 0.3120	Class C: plasma membrane	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT1G75990	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2498	Class C: plasma membrane	26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3)
AT1G20200	Predicted Affinity Capture-MS	FSW = 0.2704	Class C: plasma membrane	EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR
AT4G38600	Predicted Affinity Capture-Western Affinity Capture-Western Reconstituted Complex	FSW = 0.0297	Class C: plasma membrane	KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE
AT1G04810	Predicted Affinity Capture-MS	FSW = 0.3471	Class C: plasma membrane	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT4G24400	Predicted Affinity Capture-MS	FSW = 0.0199	Class C: plasma membrane	CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT2G20580	Predicted Reconstituted Complex Co-purification Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2741	Class C: plasma membrane	RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT2G20140	Predicted Affinity Capture-MS Affinity Capture-MS Phylogenetic profile method	FSW = 0.3062	Class C: plasma membrane	26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE
AT4G24820	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3004	Class C: plasma membrane	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT5G02490	Predicted Affinity Capture-MS	FSW = 0.0057	Class C: plasma membrane	HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT1G09100	Predicted Affinity Capture-MS Affinity Capture-Western Phylogenetic profile method	FSW = 0.3586	Class C: plasma membrane	RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT3G47520	Predicted Affinity Capture-MS	FSW = 0.0200	Unknown	MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT3G57990	Predicted Synthetic Lethality	FSW = 0.0145	Unknown	UNKNOWN PROTEIN
AT3G44300	Predicted Affinity Capture-MS	FSW = 0.0109	Unknown	NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT5G35590	Predicted Synthetic Rescue Synthetic Rescue Synthetic Rescue	FSW = 0.0793	Unknown	PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800	Predicted Affinity Capture-Western Affinity Capture-MS Co-purification interaction prediction	FSW = 0.2552	Unknown	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G26590	Predicted Affinity Capture-MS	FSW = 0.0035	Unknown	MATE EFFLUX FAMILY PROTEIN
AT3G18165	Predicted two hybrid two hybrid	FSW = 0.0169	Unknown	MOS4 (MODIFIER OF SNC14)
AT5G67630	Predicted Affinity Capture-MS	FSW = 0.0147	Unknown	DNA HELICASE PUTATIVE
AT4G30310	Predicted Affinity Capture-Western	FSW = 0.0166	Unknown	RIBITOL KINASE PUTATIVE
AT2G45300	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0280	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT3G49830	Predicted Affinity Capture-MS	FSW = 0.0224	Unknown	DNA HELICASE-RELATED
AT5G25400	Predicted Affinity Capture-MS	FSW = 0.0435	Unknown	PHOSPHATE TRANSLOCATOR-RELATED
AT1G48860	Predicted Affinity Capture-MS	FSW = 0.0199	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT3G05530	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS in vitro in vivo Phylogenetic profile method	FSW = 0.3471	Unknown	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING
AT4G10710	Predicted Synthetic Rescue Affinity Capture-Western Synthetic Rescue Phenotypic Enhancement	FSW = 0.0403	Unknown	SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G10670	Predicted Synthetic Rescue Affinity Capture-Western Synthetic Rescue	FSW = 0.0202	Unknown	GTC2
AT3G33520	Predicted two hybrid	FSW = 0.0117	Unknown	ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G34430	Predicted Affinity Capture-MS	FSW = 0.0173	Unknown	CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT3G54610	Predicted Synthetic Lethality	FSW = 0.0345	Unknown	GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT4G30860	Predicted Synthetic Lethality	FSW = 0.0113	Unknown	SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE
AT3G13445	Predicted Reconstituted Complex Affinity Capture-Western interaction prediction	FSW = 0.0488	Unknown	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G07260	Predicted Affinity Capture-MS	FSW = 0.0300	Unknown	FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT5G16820	Predicted co-fractionation Co-fractionation	FSW = 0.0256	Unknown	HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT1G03190	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0491	Unknown	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT2G37470	Predicted Affinity Capture-MS	FSW = 0.0334	Unknown	HISTONE H2B PUTATIVE
AT3G14980	Predicted Co-purification	FSW = 0.0535	Unknown	PHD FINGER TRANSCRIPTION FACTOR PUTATIVE
AT5G25150	Predicted Affinity Capture-Western interaction prediction	FSW = 0.0193	Unknown	TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT1G55520	Predicted Affinity Capture-Western Reconstituted Complex	FSW = 0.0447	Unknown	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT5G41360	Predicted Affinity Capture-MS in vitro in vivo	FSW = 0.0214	Unknown	XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING
AT1G10060	Predicted Affinity Capture-MS	FSW = 0.0046	Unknown	BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1)
AT5G08335	Predicted Affinity Capture-MS	FSW = 0.0072	Unknown	ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE
AT2G31970	Predicted Affinity Capture-MS	FSW = 0.0258	Unknown	RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G58290	Predicted two hybrid two hybrid two hybrid co-fractionation Co-fractionation Affinity Capture-MS Affinity Capture-MS two hybrid co-fractionation Co-fractionation Affinity Capture-MS interaction prediction Gene neighbors method Phylogenetic profile method	FSW = 0.3206	Unknown	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT5G57450	Predicted two hybrid two hybrid	FSW = 0.0208	Unknown	XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT1G16190	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Co-purification Phenotypic Enhancement interaction prediction	FSW = 0.2035	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT1G13060	Predicted Co-purification	FSW = 0.0996	Unknown	PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G05840	Predicted Synthetic Rescue Synthetic Rescue Synthetic Rescue	FSW = 0.0592	Unknown	PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G38470	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Co-purification Phenotypic Enhancement	FSW = 0.1183	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT1G61010	Predicted two hybrid two hybrid	FSW = 0.0180	Unknown	CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING
AT3G61710	Predicted two hybrid two hybrid	FSW = 0.0309	Unknown	AUTOPHAGY PROTEIN APG6 FAMILY
AT1G26140	Predicted Affinity Capture-MS	FSW = 0.0435	Unknown	UNKNOWN PROTEIN
AT1G29150	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2148	Unknown	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G31170	Predicted Affinity Capture-MS	FSW = 0.0161	Unknown	SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT1G54290	Predicted two hybrid interaction prediction	FSW = 0.0287	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT1G64520	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2911	Unknown	RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT2G03430	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2990	Unknown	ANKYRIN REPEAT FAMILY PROTEIN
AT2G32730	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2675	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G33560	Predicted Affinity Capture-MS	FSW = 0.0118	Unknown	SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G39590	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0369	Unknown	40S RIBOSOMAL PROTEIN S15A (RPS15AC)
AT3G11270	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3570	Unknown	MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT3G13330	Predicted co-fractionation Co-fractionation	FSW = 0.0414	Unknown	BINDING
AT3G23570	Predicted Affinity Capture-MS	FSW = 0.0187	Unknown	DIENELACTONE HYDROLASE FAMILY PROTEIN
AT4G19006	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3771	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT4G19760	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.0202	Unknown	CATALYTIC/ CATION BINDING / CHITINASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT4G29040	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Phylogenetic profile method	FSW = 0.2976	Unknown	RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE
AT4G38630	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1952	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G02880	Predicted Affinity Capture-Western Affinity Capture-Western Reconstituted Complex	FSW = 0.0254	Unknown	UPL4 UBIQUITIN-PROTEIN LIGASE
AT5G09900	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Gene neighbors method	FSW = 0.2923	Unknown	EMB2107 (EMBRYO DEFECTIVE 2107)
AT1G02080	Predicted Affinity Capture-Western	FSW = 0.0377	Unknown	TRANSCRIPTIONAL REGULATOR-RELATED
AT1G06090	Predicted Affinity Capture-MS	FSW = 0.0113	Unknown	FATTY ACID DESATURASE FAMILY PROTEIN
AT1G51710	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2126	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G55150	Predicted Affinity Capture-MS	FSW = 0.0105	Unknown	DEAD BOX RNA HELICASE PUTATIVE (RH20)
AT1G57620	Predicted Affinity Capture-MS	FSW = 0.0282	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT1G80410	Predicted Affinity Capture-MS	FSW = 0.0456	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G01830	Predicted Affinity Capture-MS	FSW = 0.0039	Unknown	WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT2G02760	Predicted Synthetic Lethality	FSW = 0.0332	Unknown	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G28720	Predicted Affinity Capture-MS	FSW = 0.0187	Unknown	HISTONE H2B PUTATIVE
AT2G31020	Predicted Affinity Capture-MS	FSW = 0.0256	Unknown	ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G32830	Predicted Affinity Capture-Western co-fractionation Co-fractionation	FSW = 0.0278	Unknown	PHT5 INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT3G03110	Predicted Affinity Capture-MS	FSW = 0.0070	Unknown	XPO1B BINDING / PROTEIN TRANSPORTER
AT3G12670	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0743	Unknown	EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT4G37660	Predicted Affinity Capture-MS	FSW = 0.0166	Unknown	RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT5G13400	Predicted Affinity Capture-MS	FSW = 0.0070	Unknown	PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G23540	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3393	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT5G60340	Predicted Affinity Capture-MS	FSW = 0.0124	Unknown	MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN
AT5G67380	Predicted Affinity Capture-MS	FSW = 0.0134	Unknown	CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT5G20560	Predicted Affinity Capture-MS	FSW = 0.0116	Unknown	BETA-13-GLUCANASE PUTATIVE
AT5G37830	Predicted Affinity Capture-MS	FSW = 0.0312	Unknown	OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.0405	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G43010	Predicted interaction prediction Affinity Capture-MS two hybrid co-fractionation Co-fractionation Affinity Capture-MS interaction prediction Gene neighbors method Phylogenetic profile method	FSW = 0.3273	Unknown	RPT4A ATPASE
AT1G64750	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2357	Unknown	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT1G30820	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0806	Unknown	CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT1G09580	Predicted Affinity Capture-MS	FSW = 0.0133	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT1G14400	Predicted Synthetic Lethality	FSW = 0.0359	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G17070	Predicted two hybrid	FSW = 0.0035	Unknown	D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT5G20000	Predicted Gene fusion method Gene neighbors method Phylogenetic profile method	FSW = 0.2227	Unknown	26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE
AT1G53780	Predicted Phylogenetic profile method	FSW = 0.1786	Unknown	ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G59510	Predicted Gene fusion method	FSW = 0.0486	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN
AT1G17370	Predicted Gene fusion method	FSW = 0.0410	Unknown	UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING
AT5G49200	Predicted Gene fusion method	FSW = 0.0718	Unknown	WD-40 REPEAT FAMILY PROTEIN / ZFWD4 PROTEIN (ZFWD4)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT5G19990 - ( RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPase )

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