Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03190 - ( UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase acting on acid anhydrides in phosphorus-containing anhydrides / nucleic acid binding )

97 Proteins interacs with AT1G03190
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G05055

Experimental

two hybrid

FSW = 0.2647

Class A:

nucleus

Class D:

nucleus (p = 0.78)

GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
YLR005WExperimental

two hybrid

FSW = 0.0099

Unknown

GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT4G14960

Predicted

Affinity Capture-MS

FSW = 0.0183

Class C:

nucleus

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G33040

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0052

Class C:

nucleus

ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC)
AT3G44110

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0243

Class C:

nucleus

ATJ3 PROTEIN BINDING
AT3G48750

Predicted

Affinity Capture-MS

in vivo

FSW = 0.0376

Class C:

nucleus

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G41370

Predicted

Co-purification

Co-purification

Co-purification

Co-purification

Co-purification

in vivo

Co-purification

Reconstituted Complex

Synthetic Lethality

interaction prediction

FSW = 0.1128

Class C:

nucleus

XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING
AT2G44680

Predicted

Phenotypic Enhancement

FSW = 0.0458

Class C:

nucleus

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT4G25630

Predicted

Synthetic Lethality

FSW = 0.0020

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT4G17020

Predicted

Co-purification

Co-purification

FSW = 0.1450

Class C:

nucleus

TRANSCRIPTION FACTOR-RELATED
AT3G61420

Predicted

two hybrid

in vitro

in vivo

in vivo

in vitro

two hybrid

FSW = 0.0536

Class C:

nucleus

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S KELCH RELATED (INTERPROIPR013089) BSD (INTERPROIPR005607) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSCRIPTION FACTOR-RELATED (TAIRAT1G557501) HAS 247 BLAST HITS TO 247 PROTEINS IN 115 SPECIES ARCHAE - 1 BACTERIA - 0 METAZOA - 116 FUNGI - 84 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT1G21700

Predicted

Phenotypic Enhancement

FSW = 0.0213

Class C:

nucleus

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT3G12810

Predicted

Phenotypic Enhancement

FSW = 0.1598

Class C:

nucleus

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G35910

Predicted

Synthetic Rescue

FSW = 0.1304

Class C:

nucleus

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0254

Class C:

nucleus

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G18340

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1157

Class C:

nucleus

BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED
AT3G18130

Predicted

Affinity Capture-MS

FSW = 0.0117

Class C:

nucleus

RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT1G02740

Predicted

Phenotypic Enhancement

FSW = 0.0409

Class C:

nucleus

CHROMATIN BINDING
AT5G11170

Predicted

Synthetic Rescue

FSW = 0.0447

Class C:

nucleus

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT2G18760

Predicted

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

interaction prediction

FSW = 0.1069

Class C:

nucleus

CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G38560

Predicted

Phenotypic Enhancement

FSW = 0.1356

Class C:

nucleus

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT2G36740

Predicted

Phenotypic Enhancement

FSW = 0.1259

Class C:

nucleus

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G43810

Predicted

Phenotypic Suppression

FSW = 0.0853

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G18040

Predicted

Synthetic Lethality

Co-purification

Co-purification

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0555

Class C:

nucleus

CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE
AT1G55750

Predicted

two hybrid

two hybrid

in vivo

in vivo

in vitro

in vitro

Co-purification

Co-purification

Co-purification

Co-purification

Co-purification

Co-purification

Co-purification

Affinity Capture-MS

FSW = 0.1668

Class C:

nucleus

TRANSCRIPTION FACTOR-RELATED
AT5G41360

Predicted

in vivo

Co-purification

Co-purification

Co-purification

Co-purification

Co-purification

Co-purification

Reconstituted Complex

Synthetic Lethality

FSW = 0.1740

Class C:

nucleus

XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING
AT1G49240

Predicted

Synthetic Lethality

FSW = 0.0171

Unknown

ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G78900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0698

Unknown

VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT1G04820Predicted

Affinity Capture-MS

FSW = 0.0178

Unknown

TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G47520

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0105

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT2G05710

Predicted

Affinity Capture-MS

FSW = 0.0373

Unknown

ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE
AT1G64790Predicted

Affinity Capture-MS

Phenotypic Enhancement

interaction prediction

FSW = 0.1143

Unknown

BINDING
AT5G13710

Predicted

Phenotypic Enhancement

FSW = 0.0360

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT3G52140Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0211

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT1G18080

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0097

Unknown

ATARCA NUCLEOTIDE BINDING
AT5G03290

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0644

Unknown

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT4G26970

Predicted

interaction prediction

FSW = 0.0141

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT1G12520

Predicted

Phenotypic Enhancement

FSW = 0.0966

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT5G22060

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0346

Unknown

ATJ2 PROTEIN BINDING
AT3G12110

Predicted

Synthetic Lethality

FSW = 0.0486

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G35830

Predicted

Affinity Capture-MS

FSW = 0.0420

Unknown

ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO)
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.1041

Unknown

SEC22 TRANSPORTER
AT3G04050

Predicted

Affinity Capture-MS

FSW = 0.0198

Unknown

PYRUVATE KINASE PUTATIVE
AT5G63680

Predicted

Affinity Capture-MS

FSW = 0.0292

Unknown

PYRUVATE KINASE PUTATIVE
AT3G18524

Predicted

two hybrid

Phenotypic Enhancement

interaction prediction

Co-expression

FSW = 0.0475

Unknown

MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT5G19990

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0491

Unknown

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT2G20580

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0206

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT3G53110

Predicted

Affinity Capture-Western

FSW = 0.0757

Unknown

LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE
AT2G38740

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0102

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT2G44950

Predicted

Phenotypic Enhancement

FSW = 0.1373

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT5G23250

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0546

Unknown

SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE
AT5G08300

Predicted

Affinity Capture-MS

FSW = 0.0354

Unknown

SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE
AT3G09810

Predicted

Affinity Capture-MS

FSW = 0.0658

Unknown

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT1G53240

Predicted

Affinity Capture-MS

FSW = 0.0324

Unknown

MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL
AT2G31970

Predicted

Synthetic Lethality

Co-expression

FSW = 0.1131

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G66130

Predicted

Phenotypic Enhancement

FSW = 0.0603

Unknown

ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT5G58290

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0522

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT3G28030

Predicted

Co-purification

FSW = 0.1353

Unknown

UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT1G62430

Predicted

Affinity Capture-Western

biochemical

FSW = 0.0107

Unknown

ATCDS1 PHOSPHATIDATE CYTIDYLYLTRANSFERASE
AT4G24520

Predicted

Affinity Capture-MS

FSW = 0.0107

Unknown

ATR1 (ARABIDOPSIS P450 REDUCTASE 1) NADPH-HEMOPROTEIN REDUCTASE
AT1G04020

Predicted

Phenotypic Enhancement

FSW = 0.1272

Unknown

BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G15780

Predicted

Phenotypic Enhancement

FSW = 0.0487

Unknown

UNKNOWN PROTEIN
AT1G17760

Predicted

Synthetic Rescue

FSW = 0.0333

Unknown

CSTF77 PROTEIN BINDING
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.1631

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G52740

Predicted

Phenotypic Enhancement

FSW = 0.1607

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G67500

Predicted

Phenotypic Enhancement

FSW = 0.0322

Unknown

ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT2G44150

Predicted

Phenotypic Enhancement

FSW = 0.1295

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G11910

Predicted

Phenotypic Enhancement

FSW = 0.0134

Unknown

UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT3G42660

Predicted

Phenotypic Enhancement

FSW = 0.0926

Unknown

NUCLEOTIDE BINDING
AT4G15770

Predicted

Synthetic Lethality

FSW = 0.0077

Unknown

RNA BINDING / PROTEIN BINDING
AT5G02310

Predicted

Phenotypic Enhancement

FSW = 0.0462

Unknown

PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE
AT5G10260

Predicted

Phenotypic Enhancement

FSW = 0.1324

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10790

Predicted

Phenotypic Suppression

FSW = 0.0705

Unknown

UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G11200

Predicted

Synthetic Rescue

FSW = 0.0444

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.0957

Unknown

BINDING
AT5G42000

Predicted

Phenotypic Enhancement

FSW = 0.1169

Unknown

ORMDL FAMILY PROTEIN
AT5G46030

Predicted

Phenotypic Enhancement

FSW = 0.0726

Unknown

UNKNOWN PROTEIN
AT5G48120

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

interaction prediction

Co-expression

FSW = 0.1095

Unknown

BINDING
AT5G61150

Predicted

Phenotypic Enhancement

FSW = 0.1085

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT1G64550

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0266

Unknown

ATGCN3 TRANSPORTER
AT2G02760

Predicted

Phenotypic Enhancement

FSW = 0.1311

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT3G11270

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0360

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT3G19940

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0029

Unknown

SUGAR TRANSPORTER PUTATIVE
AT3G21060

Predicted

Phenotypic Enhancement

FSW = 0.1870

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G54380

Predicted

Phenotypic Enhancement

FSW = 0.1289

Unknown

SAC3/GANP FAMILY PROTEIN
AT4G04210

Predicted

Phenotypic Enhancement

FSW = 0.0814

Unknown

PUX4 PROTEIN BINDING
AT4G38630

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0717

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G10400Predicted

Phenotypic Enhancement

FSW = 0.0477

Unknown

HISTONE H3
AT5G15400

Predicted

Phenotypic Enhancement

FSW = 0.0224

Unknown

U-BOX DOMAIN-CONTAINING PROTEIN
AT5G26680

Predicted

synthetic growth defect

FSW = 0.0930

Unknown

ENDONUCLEASE PUTATIVE
AT5G27620

Predicted

Co-purification

Affinity Capture-MS

interaction prediction

FSW = 0.0680

Unknown

CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G66100

Predicted

Phenotypic Enhancement

FSW = 0.1169

Unknown

LA DOMAIN-CONTAINING PROTEIN
AT5G67320

Predicted

Phenotypic Enhancement

FSW = 0.0937

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT5G02530

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0157

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G12400

Predicted

in vitro

FSW = 0.1625

Unknown

DNA BINDING
AT1G14400

Predicted

Phenotypic Enhancement

FSW = 0.0781

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G54440

Predicted

Synthetic Rescue

FSW = 0.0467

Unknown

3-5 EXONUCLEASE/ NUCLEIC ACID BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454