Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03190 - ( UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase acting on acid anhydrides in phosphorus-containing anhydrides / nucleic acid binding )
97 Proteins interacs with AT1G03190Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G05055![]() ![]() ![]() ![]() | Experimentaltwo hybrid | FSW = 0.2647
| Class A:nucleusClass D:nucleus (p = 0.78) | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
YLR005W | Experimentaltwo hybrid | FSW = 0.0099
| Unknown | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT4G14960![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0183
| Class C:nucleus | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G33040![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0052
| Class C:nucleus | ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC) |
AT3G44110![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0243
| Class C:nucleus | ATJ3 PROTEIN BINDING |
AT3G48750![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSin vivo | FSW = 0.0376
| Class C:nucleus | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G41370![]() ![]() ![]() ![]() | PredictedCo-purificationCo-purificationCo-purificationCo-purificationCo-purificationin vivoCo-purificationReconstituted ComplexSynthetic Lethalityinteraction prediction | FSW = 0.1128
| Class C:nucleus | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT2G44680![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0458
| Class C:nucleus | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT4G25630![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0020
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT4G17020![]() ![]() ![]() ![]() | PredictedCo-purificationCo-purification | FSW = 0.1450
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT3G61420![]() ![]() ![]() ![]() | Predictedtwo hybridin vitroin vivoin vivoin vitrotwo hybrid | FSW = 0.0536
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S KELCH RELATED (INTERPROIPR013089) BSD (INTERPROIPR005607) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSCRIPTION FACTOR-RELATED (TAIRAT1G557501) HAS 247 BLAST HITS TO 247 PROTEINS IN 115 SPECIES ARCHAE - 1 BACTERIA - 0 METAZOA - 116 FUNGI - 84 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT1G21700![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0213
| Class C:nucleus | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT3G12810![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1598
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G35910![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.1304
| Class C:nucleus | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT5G37720![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0254
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G18340![]() ![]() ![]() ![]() | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1157
| Class C:nucleus | BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED |
AT3G18130![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0117
| Class C:nucleus | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT1G02740![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0409
| Class C:nucleus | CHROMATIN BINDING |
AT5G11170![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0447
| Class C:nucleus | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT2G18760![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationinteraction prediction | FSW = 0.1069
| Class C:nucleus | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G38560![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1356
| Class C:nucleus | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT2G36740![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1259
| Class C:nucleus | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G43810![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0853
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G18040![]() ![]() ![]() ![]() | PredictedSynthetic LethalityCo-purificationCo-purificationAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0555
| Class C:nucleus | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT1G55750![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybridin vivoin vivoin vitroin vitroCo-purificationCo-purificationCo-purificationCo-purificationCo-purificationCo-purificationCo-purificationAffinity Capture-MS | FSW = 0.1668
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT5G41360![]() ![]() ![]() ![]() | Predictedin vivoCo-purificationCo-purificationCo-purificationCo-purificationCo-purificationCo-purificationReconstituted ComplexSynthetic Lethality | FSW = 0.1740
| Class C:nucleus | XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT1G49240![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0171
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G78900![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0698
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G47520![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0105
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT2G05710![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE |
AT1G64790 | PredictedAffinity Capture-MSPhenotypic Enhancementinteraction prediction | FSW = 0.1143
| Unknown | BINDING |
AT5G13710![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0360
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT3G52140 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0211
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G18080![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0097
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT5G03290![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0644
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT4G26970![]() ![]() ![]() ![]() | Predictedinteraction prediction | FSW = 0.0141
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT1G12520![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0966
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT5G22060![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0346
| Unknown | ATJ2 PROTEIN BINDING |
AT3G12110![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0486
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G35830![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO) |
AT1G11890![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1041
| Unknown | SEC22 TRANSPORTER |
AT3G04050![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G63680![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0292
| Unknown | PYRUVATE KINASE PUTATIVE |
AT3G18524![]() ![]() ![]() ![]() | Predictedtwo hybridPhenotypic Enhancementinteraction predictionCo-expression | FSW = 0.0475
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT5G19990![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0491
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT2G20580![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0206
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT3G53110![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0757
| Unknown | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT2G38740![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0102
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT2G44950![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1373
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT5G23250![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0546
| Unknown | SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE |
AT5G08300![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0354
| Unknown | SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE |
AT3G09810![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0658
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT1G53240![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL |
AT2G31970![]() ![]() ![]() ![]() | PredictedSynthetic LethalityCo-expression | FSW = 0.1131
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G66130![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0603
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G58290![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0522
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT3G28030![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.1353
| Unknown | UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING |
AT1G62430![]() ![]() ![]() ![]() | PredictedAffinity Capture-Westernbiochemical | FSW = 0.0107
| Unknown | ATCDS1 PHOSPHATIDATE CYTIDYLYLTRANSFERASE |
AT4G24520![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | ATR1 (ARABIDOPSIS P450 REDUCTASE 1) NADPH-HEMOPROTEIN REDUCTASE |
AT1G04020![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1272
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G15780![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0487
| Unknown | UNKNOWN PROTEIN |
AT1G17760![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0333
| Unknown | CSTF77 PROTEIN BINDING |
AT1G51710![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1631
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G52740![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1607
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G67500![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0322
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G44150![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1295
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G11910![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0134
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT3G42660![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0926
| Unknown | NUCLEOTIDE BINDING |
AT4G15770![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0077
| Unknown | RNA BINDING / PROTEIN BINDING |
AT5G02310![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0462
| Unknown | PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE |
AT5G10260![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1324
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G10790![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0705
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
AT5G11200![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0444
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.0957
| Unknown | BINDING |
AT5G42000![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1169
| Unknown | ORMDL FAMILY PROTEIN |
AT5G46030![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0726
| Unknown | UNKNOWN PROTEIN |
AT5G48120![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancementinteraction predictionCo-expression | FSW = 0.1095
| Unknown | BINDING |
AT5G61150![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1085
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT1G64550![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0266
| Unknown | ATGCN3 TRANSPORTER |
AT2G02760![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1311
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT3G11270![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0360
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT3G19940![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0029
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G21060![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1870
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G54380![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1289
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G04210![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0814
| Unknown | PUX4 PROTEIN BINDING |
AT4G38630![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0717
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G10400 | PredictedPhenotypic Enhancement | FSW = 0.0477
| Unknown | HISTONE H3 |
AT5G15400![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0224
| Unknown | U-BOX DOMAIN-CONTAINING PROTEIN |
AT5G26680![]() ![]() ![]() ![]() | Predictedsynthetic growth defect | FSW = 0.0930
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G27620![]() ![]() ![]() ![]() | PredictedCo-purificationAffinity Capture-MSinteraction prediction | FSW = 0.0680
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G66100![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1169
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT5G67320![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0937
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT5G02530![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.0157
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G12400![]() ![]() ![]() ![]() | Predictedin vitro | FSW = 0.1625
| Unknown | DNA BINDING |
AT1G14400![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0781
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G54440![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0467
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454