Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G04020 - ( BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA binding / transcription coactivator )

77 Proteins interacs with AT1G04020
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G21070

Experimental

two hybrid

protein complementation assay

FSW = 0.0438

Unknown

ATBRCA1 UBIQUITIN-PROTEIN LIGASE
AT5G43530

Predicted

Phenotypic Enhancement

two hybrid

two hybrid

Phenotypic Enhancement

Affinity Capture-Western

FSW = 0.4579

Unknown

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT5G16630

Predicted

Phenotypic Enhancement

FSW = 0.0892

Unknown

RAD4 DAMAGED DNA BINDING
AT4G14970Predicted

Colocalization

Reconstituted Complex

FSW = 0.0275

Unknown

UNKNOWN PROTEIN
AT3G25660

Predicted

synthetic growth defect

FSW = 0.0454

Unknown

GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE PUTATIVE
AT3G11630

Predicted

synthetic growth defect

synthetic growth defect

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1603

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT2G28190

Predicted

Synthetic Lethality

FSW = 0.2697

Unknown

CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT2G37690

Predicted

two hybrid

FSW = 0.0080

Unknown

PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE PUTATIVE / AIR CARBOXYLASE PUTATIVE
AT1G12520

Predicted

synthetic growth defect

FSW = 0.2818

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT1G07670

Predicted

synthetic growth defect

FSW = 0.0872

Unknown

CALCIUM-TRANSPORTING ATPASE
AT3G18524

Predicted

in vitro

Reconstituted Complex

FSW = 0.2151

Unknown

MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT1G21700

Predicted

Phenotypic Enhancement

FSW = 0.0509

Unknown

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT4G02070

Predicted

Reconstituted Complex

FSW = 0.1088

Unknown

MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING
AT5G41580

Predicted

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Phenotypic Enhancement

Phenotypic Suppression

FSW = 0.0876

Unknown

ZINC ION BINDING
AT1G75230

Predicted

Phenotypic Enhancement

FSW = 0.0692

Unknown

HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT2G03870

Predicted

synthetic growth defect

FSW = 0.1785

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G03190

Predicted

Phenotypic Enhancement

FSW = 0.1272

Unknown

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT1G07370

Predicted

Synthetic Rescue

Synthetic Rescue

two hybrid

Synthetic Lethality

Synthetic Rescue

interologs mapping

FSW = 0.3363

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT3G19210

Predicted

synthetic growth defect

FSW = 0.3414

Unknown

ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G03330

Predicted

two hybrid

FSW = 0.0128

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT1G76860

Predicted

two hybrid

FSW = 0.0294

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G44950

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2976

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT5G41150

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1956

Unknown

UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT1G13060

Predicted

Phenotypic Suppression

FSW = 0.0223

Unknown

PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G31970

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.3720

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G57450

Predicted

synthetic growth defect

FSW = 0.2777

Unknown

XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G66130

Predicted

synthetic growth defect

FSW = 0.2415

Unknown

ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT5G63960

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.1551

Unknown

EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G42120

Predicted

Synthetic Rescue

synthetic growth defect

FSW = 0.0800

Unknown

POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT3G05210

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0866

Unknown

ERCC1 5-FLAP ENDONUCLEASE
AT3G28030

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1082

Unknown

UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT5G54260

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.3794

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G38470

Predicted

synthetic growth defect

FSW = 0.0804

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G20850

Predicted

synthetic growth defect

synthetic growth defect

Affinity Capture-MS

Affinity Capture-Western

Phenotypic Enhancement

FSW = 0.2985

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G80210

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0424

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN MALE GAMETOPHYTE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MOV34 FAMILY PROTEIN (TAIRAT3G068202) HAS 785 BLAST HITS TO 706 PROTEINS IN 167 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 423 FUNGI - 147 PLANTS - 120 VIRUSES - 0 OTHER EUKARYOTES - 92 (SOURCE NCBI BLINK)
AT5G42470

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0433

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BRAIN AND REPRODUCTIVE ORGAN-EXPRESSED (INTERPROIPR010358) HAS 125 BLAST HITS TO 120 PROTEINS IN 32 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 108 FUNGI - 0 PLANTS - 14 VIRUSES - 0 OTHER EUKARYOTES - 3 (SOURCE NCBI BLINK)
AT5G60940

Predicted

two hybrid

Reconstituted Complex

two hybrid

in vitro

in vivo

in vivo

in vitro

Reconstituted Complex

FSW = 0.0178

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G25540

Predicted

Reconstituted Complex

FSW = 0.0876

Unknown

MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT4G27230

Predicted

Reconstituted Complex

Reconstituted Complex

FSW = 0.0459

Unknown

HTA2 (HISTONE H2A) DNA BINDING
AT1G04730Predicted

synthetic growth defect

FSW = 0.2811

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G21710

Predicted

Phenotypic Enhancement

FSW = 0.0769

Unknown

OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) OXIDIZED PURINE BASE LESION DNA N-GLYCOSYLASE
AT1G24290

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1486

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.1403

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G55915

Predicted

Phenotypic Enhancement

FSW = 0.1284

Unknown

ZINC ION BINDING
AT1G66740

Predicted

synthetic growth defect

FSW = 0.2430

Unknown

SGA2
AT1G67190

Predicted

synthetic growth defect

FSW = 0.3830

Unknown

F-BOX FAMILY PROTEIN
AT1G78870

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0758

Unknown

UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G80410

Predicted

synthetic growth defect

FSW = 0.1837

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

far western blotting

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

two hybrid

Affinity Capture-Western

Reconstituted Complex

Phenotypic Enhancement

FSW = 0.3993

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G44580

Predicted

synthetic growth defect

FSW = 0.2915

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT3G02820

Predicted

synthetic growth defect

FSW = 0.2642

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G18860

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2393

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G42660

Predicted

synthetic growth defect

FSW = 0.3358

Unknown

NUCLEOTIDE BINDING
AT3G57870

Predicted

two hybrid

Affinity Capture-Western

Synthetic Rescue

FSW = 0.0460

Unknown

SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT3G58560

Predicted

synthetic growth defect

FSW = 0.1595

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G25120Predicted

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

two hybrid

two hybrid

Synthetic Rescue

FSW = 0.3479

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G38630

Predicted

synthetic growth defect

FSW = 0.1135

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G09740

Predicted

synthetic growth defect

FSW = 0.2203

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10260

Predicted

Synthetic Lethality

FSW = 0.1121

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10960

Predicted

synthetic growth defect

FSW = 0.2187

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13780

Predicted

synthetic growth defect

FSW = 0.2145

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G26680

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.3534

Unknown

ENDONUCLEASE PUTATIVE
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.2027

Unknown

BINDING
AT5G59140

Predicted

synthetic growth defect

FSW = 0.0269

Unknown

SKP1 FAMILY PROTEIN
AT1G52740

Predicted

synthetic growth defect

FSW = 0.1520

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G60430

Predicted

synthetic growth defect

FSW = 0.0783

Unknown

ARPC3 (ACTIN-RELATED PROTEIN C3) STRUCTURAL MOLECULE
AT1G67500

Predicted

Synthetic Rescue

Phenotypic Suppression

FSW = 0.1957

Unknown

ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT3G06910

Predicted

Synthetic Rescue

FSW = 0.0902

Unknown

ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE
AT3G13440

Predicted

synthetic growth defect

FSW = 0.0654

Unknown

METHYLTRANSFERASE/ NUCLEIC ACID BINDING
AT3G22590

Predicted

synthetic growth defect

FSW = 0.1298

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT4G11920

Predicted

synthetic growth defect

FSW = 0.1824

Unknown

CCS52A2 SIGNAL TRANSDUCER
AT4G30870

Predicted

synthetic growth defect

FSW = 0.2193

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G33240

Predicted

synthetic growth defect

FSW = 0.1403

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G10270

Predicted

Synthetic Lethality

FSW = 0.1567

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G43500

Predicted

synthetic growth defect

FSW = 0.2923

Unknown

ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G45600

Predicted

synthetic growth defect

FSW = 0.2057

Unknown

GAS41 PROTEIN BINDING
AT5G66100

Predicted

Phenotypic Enhancement

FSW = 0.1415

Unknown

LA DOMAIN-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454