Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G37690 - ( phosphoribosylaminoimidazole carboxylase putative / AIR carboxylase putative )
22 Proteins interacs with AT2G37690Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G12780 | Predictedinteraction prediction | FSW = 0.0677
| Class C:plastid | PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE |
AT3G27925 | Predictedpull down | FSW = 0.0345
| Class C:plastid | DEGP1 (DEGP PROTEASE 1) SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT1G74260 | PredictedPhenotypic Suppression | FSW = 0.1394
| Class C:plastid | PUR4 (PURINE BIOSYNTHESIS 4) ATP BINDING / CATALYTIC/ PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE |
AT1G56190 | Predictedtwo hybrid | FSW = 0.0677
| Class C:plastid | PHOSPHOGLYCERATE KINASE PUTATIVE |
AT5G60600 | Predictedpull down | FSW = 0.0315
| Class C:plastid | HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) 4 IRON 4 SULFUR CLUSTER BINDING / 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE |
AT1G09830 | PredictedPhenotypic Suppression | FSW = 0.0400
| Class C:plastid | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (PUR2) |
AT1G75990 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G20200 | PredictedAffinity Capture-MS | FSW = 0.0277
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT3G21700 | Predictedtwo hybrid | FSW = 0.0180
| Unknown | SGP2 GTP BINDING |
AT5G54840 | Predictedinteraction prediction | FSW = 0.0126
| Unknown | SGP1 GTP BINDING |
AT5G40760 | Predictedpull down | FSW = 0.0278
| Unknown | G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6) GLUCOSE-6-PHOSPHATE DEHYDROGENASE |
AT5G19910 | Predictedtwo hybrid | FSW = 0.0161
| Unknown | SOH1 FAMILY PROTEIN |
AT1G48900 | Predictedinteraction predictiontwo hybrid | FSW = 0.0989
| Unknown | SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 3 / SRP54 (SRP-54C) |
AT1G15310 | Predictedtwo hybrid | FSW = 0.0989
| Unknown | ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G22210 | Predictedpull down | FSW = 0.0914
| Unknown | TREHALOSE-6-PHOSPHATE PHOSPHATASE PUTATIVE |
AT1G04020 | Predictedtwo hybrid | FSW = 0.0080
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT2G16570 | PredictedPhenotypic Suppression | FSW = 0.0769
| Unknown | ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1) AMIDOPHOSPHORIBOSYLTRANSFERASE |
AT1G36280 | PredictedSynthetic Rescue | FSW = 0.0865
| Unknown | ADENYLOSUCCINATE LYASE PUTATIVE / ADENYLOSUCCINASE PUTATIVE |
AT1G54140 | Predictedinteraction predictiontwo hybrid | FSW = 0.0290
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT2G39340 | Predictedtwo hybrid | FSW = 0.0769
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT1G53880 | Predictedtwo hybrid | FSW = 0.0301
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G72340 | Predictedinteraction prediction | FSW = 0.0108
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454