Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G20200 - ( EMB2719 (EMBRYO DEFECTIVE 2719) enzyme regulator )
46 Proteins interacs with AT1G20200| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G25490
   | Experimentalbiochemical | FSW = 0.2304
| Class D:nucleus (p = 0.78) | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G45010
| Experimentalprotein complementation assaytwo hybrid | FSW = 0.0465
| Unknown | ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V) |
| AT1G64750
| Experimentaltwo hybridprotein complementation assay | FSW = 0.3741
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
| AT3G22630
| PredictedAffinity Capture-MSCo-purificationCo-expression | FSW = 0.3767
| Class C:plasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G48750
| PredictedAffinity Capture-WesternCo-purificationsynthetic growth defect | FSW = 0.0415
| Class C:plasma membrane | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT1G45000
| PredictedAffinity Capture-MSCo-expression | FSW = 0.4723
| Class C:plasma membrane | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
| AT5G52640
| Predictedinterologs mappingsynthetic growth defect | FSW = 0.0177
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT1G75990
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.7018
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
| AT5G19990
| PredictedAffinity Capture-MS | FSW = 0.2704
| Class C:plasma membrane | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT1G53750
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3864
| Class C:plasma membrane | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
| AT1G04810
| PredictedAffinity Capture-MS | FSW = 0.6157
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT2G20580
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationCo-expression | FSW = 0.3677
| Class C:plasma membrane | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
| AT2G20140
| PredictedAffinity Capture-MS | FSW = 0.4384
| Class C:plasma membrane | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
| AT4G24820
| Predictedinteraction predictiontwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridCo-expression | FSW = 0.4569
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
| AT3G51260
| PredictedAffinity Capture-MS | FSW = 0.2808
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT2G27020
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1517
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT4G31300
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2520
| Unknown | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT4G14800
| Predictedinteraction prediction | FSW = 0.2764
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT2G37690
| PredictedAffinity Capture-MS | FSW = 0.0277
| Unknown | PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE PUTATIVE / AIR CARBOXYLASE PUTATIVE |
| AT2G17265
| PredictedAffinity Capture-MS | FSW = 0.0660
| Unknown | HSK (HOMOSERINE KINASE) HOMOSERINE KINASE |
| AT1G63780
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0493
| Unknown | IMP4 |
| AT4G25630
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0147
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT3G05710
| PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
| AT2G03120
| PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
| AT1G16190
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2240
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT5G58290
| PredictedAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.3902
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
| AT1G77140
| PredictedAffinity Capture-MS | FSW = 0.0990
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
| AT5G09900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4448
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
| AT4G38630
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2007
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
| AT4G19006
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4395
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
| AT3G11270
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4134
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
| AT1G64520
| Predictedtwo hybridinterologs mappingAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingSynthetic Lethalitytwo hybridinteraction predictionCo-expression | FSW = 0.4209
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
| AT1G51710
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2609
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
| AT1G29150
| PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationinteraction predictionGene neighbors methodCo-expression | FSW = 0.3570
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
| AT3G03010
| PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | AMINOACYL-TRNA HYDROLASE |
| AT1G20920
| PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT5G23540
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4529
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT1G71010
| PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
| AT1G24320
| PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | ALPHA-GLUCOSIDASE PUTATIVE |
| AT2G03430
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3980
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
| AT4G27040
| PredictedAffinity Capture-MS | FSW = 0.0734
| Unknown | VPS22 |
| AT1G80410
| PredictedAffinity Capture-MS | FSW = 0.0734
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
| AT1G60620
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0131
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT1G54210
| PredictedAffinity Capture-MS | FSW = 0.1632
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
| AT2G27960
| PredictedReconstituted Complexsynthetic growth defect | FSW = 0.0190
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
| AT3G13970
| Predictedinteraction prediction | FSW = 0.1655
| Unknown | APG12B (AUTOPHAGY 12 B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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