Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G54210 - ( ATG12A (AUTOPHAGY 12 A) protein binding )
32 Proteins interacs with AT1G54210Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G04910 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G09650 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT1G15710 | PredictedAffinity Capture-MS | FSW = 0.0571
| Unknown | PREPHENATE DEHYDROGENASE FAMILY PROTEIN |
AT1G09830 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (PUR2) |
AT1G48860 | PredictedAffinity Capture-MS | FSW = 0.0348
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT1G20200 | PredictedAffinity Capture-MS | FSW = 0.1632
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0917
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G53750 | PredictedAffinity Capture-MS | FSW = 0.1243
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT4G24820 | PredictedAffinity Capture-MS | FSW = 0.1525
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT3G12050 | PredictedAffinity Capture-MS | FSW = 0.0839
| Unknown | AHA1 DOMAIN-CONTAINING PROTEIN |
AT3G55410 | PredictedAffinity Capture-MS | FSW = 0.0455
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT5G26710 | PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT5G58290 | PredictedAffinity Capture-MS | FSW = 0.1488
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT3G27000 | PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G24090 | PredictedAffinity Capture-MS | FSW = 0.0721
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT5G23540 | PredictedAffinity Capture-MS | FSW = 0.1329
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G15790 | PredictedAffinity Capture-MS | FSW = 0.0192
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G62120 | PredictedAffinity Capture-MS | FSW = 0.0641
| Unknown | TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN |
AT4G16580 | PredictedAffinity Capture-MS | FSW = 0.0275
| Unknown | CATALYTIC |
AT4G38630 | PredictedAffinity Capture-MS | FSW = 0.0595
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09900 | PredictedAffinity Capture-MS | FSW = 0.1641
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT1G29150 | PredictedAffinity Capture-MS | FSW = 0.1038
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G04170 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT2G26970 | PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT5G46180 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | DELTA-OAT ORNITHINE-OXO-ACID TRANSAMINASE |
AT3G03110 | PredictedAffinity Capture-MS | FSW = 0.0219
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT5G48120 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | BINDING |
AT2G22480 | PredictedAffinity Capture-MS | FSW = 0.0402
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT4G39830 | PredictedAffinity Capture-MS | FSW = 0.0455
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT5G45900 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-Westerntwo hybrid | FSW = 0.0435
| Unknown | APG7 (AUTOPHAGY 7) APG8 ACTIVATING ENZYME |
AT5G61500 | Predictedtwo hybridtwo hybrid | FSW = 0.0580
| Unknown | ATG3 |
AT5G65860 | Predictedtwo hybrid | FSW = 0.0254
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454