Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G62120 - ( tRNA synthetase class II (G H P and S) family protein )
22 Proteins interacs with AT3G62120Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G42580 | Experimentalphage display | FSW = 0.0156
| Unknown | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3) BINDING / PROTEIN BINDING |
AT5G56000 | Predictedin vitroin vivo | FSW = 0.0256
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT5G23670 | PredictedAffinity Capture-MS | FSW = 0.1460
| Unknown | LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT1G58030 | PredictedAffinity Capture-MS | FSW = 0.0602
| Unknown | CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT5G52520 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0711
| Unknown | OVA6 (OVULE ABORTION 6) ATP BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / PROLINE-TRNA LIGASE |
AT4G26300 | Predictedtwo hybrid | FSW = 0.0814
| Unknown | EMB1027 (EMBRYO DEFECTIVE 1027) ATP BINDING / AMINOACYL-TRNA LIGASE/ ARGININE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT5G52640 | Predictedin vitroin vivo | FSW = 0.0091
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G20970 | PredictedAffinity Capture-MS | FSW = 0.0385
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT4G13780 | Predictedin vitroin vitro | FSW = 0.0912
| Unknown | METHIONINE--TRNA LIGASE PUTATIVE / METHIONYL-TRNA SYNTHETASE PUTATIVE / METRS PUTATIVE |
AT3G24090 | PredictedAffinity Capture-MS | FSW = 0.1446
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT1G63160 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT3G03110 | PredictedAffinity Capture-MS | FSW = 0.1205
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G13970 | PredictedAffinity Capture-MS | FSW = 0.0687
| Unknown | APG12B (AUTOPHAGY 12 B) |
AT3G60860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0446
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G37760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1248
| Unknown | SQE3 (SQUALENE EPOXIDASE 3) SQUALENE MONOOXYGENASE |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.0075
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G19610 | PredictedAffinity Capture-MS | FSW = 0.1129
| Unknown | SEC7 DOMAIN-CONTAINING PROTEIN |
AT1G54210 | PredictedAffinity Capture-MS | FSW = 0.0641
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
AT3G48780 | PredictedAffinity Capture-MS | FSW = 0.0850
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
AT1G58440 | PredictedAffinity Capture-MS | FSW = 0.2159
| Unknown | XF1 SQUALENE MONOOXYGENASE |
AT1G01960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0489
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454