Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G01960 - ( EDA10 (embryo sac development arrest 10) ARF guanyl-nucleotide exchange factor/ binding / guanyl-nucleotide exchange factor )
67 Proteins interacs with AT1G01960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G36160 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT1G04820 | PredictedAffinity Capture-MSSynthetic LethalityCo-expression | FSW = 0.0068
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G02130 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0600
| Unknown | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT2G01470 | PredictedSynthetic Lethality | FSW = 0.0321
| Unknown | STL2P (SEC12P-LIKE 2 PROTEIN) NUCLEOTIDE BINDING |
AT3G07100 | Predictedinteraction prediction | FSW = 0.0163
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT3G55400 | Predictedtwo hybrid | FSW = 0.0069
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT5G03290 | Predictedinteraction prediction | FSW = 0.0319
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT1G73820 | PredictedSynthetic Lethality | FSW = 0.0108
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT5G26830 | PredictedSynthetic Lethality | FSW = 0.0254
| Unknown | THREONYL-TRNA SYNTHETASE / THREONINE--TRNA LIGASE (THRRS) |
AT1G55690 | Predictedtwo hybrid | FSW = 0.0240
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G05570 | Predictedinteraction prediction | FSW = 0.0145
| Unknown | CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G30230 | PredictedSynthetic Lethality | FSW = 0.0241
| Unknown | ELONGATION FACTOR 1-BETA / EF-1-BETA |
AT1G06400 | Predictedinterologs mapping | FSW = 0.0143
| Unknown | ARA-2 GTP BINDING |
AT2G19760 | PredictedSynthetic Lethality | FSW = 0.0188
| Unknown | PRF1 (PROFILIN 1) ACTIN BINDING |
AT5G04600 | PredictedSynthetic Lethality | FSW = 0.0309
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G07630 | PredictedSynthetic Lethality | FSW = 0.0317
| Unknown | LIPID TRANSPORTER |
AT3G07050 | PredictedSynthetic LethalityCo-expression | FSW = 0.0324
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT2G40290 | PredictedSynthetic Lethality | FSW = 0.0141
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT1G07370 | PredictedSynthetic Lethality | FSW = 0.0068
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT3G09810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0326
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT2G47990 | PredictedSynthetic Lethality | FSW = 0.0219
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT5G48580 | PredictedAffinity Capture-Western | FSW = 0.0141
| Unknown | FKBP15-2 FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G46520 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0370
| Unknown | CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE |
AT5G40820 | PredictedSynthetic Lethality | FSW = 0.0274
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT3G28730 | PredictedSynthetic Lethality | FSW = 0.0099
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT1G05180 | PredictedAffinity Capture-MS | FSW = 0.0059
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G06550 | Predictedtwo hybrid | FSW = 0.0076
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT5G66620 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0104
| Unknown | DAR6 (DA1-RELATED PROTEIN 6) ZINC ION BINDING |
AT3G01090 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0075
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT1G17280 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | UBC34 (UBIQUITIN-CONJUGATING ENZYME 34) UBIQUITIN-PROTEIN LIGASE |
AT1G12470 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0121
| Unknown | PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN |
AT3G16840 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0312
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT2G45810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0158
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G40010 | PredictedAffinity Capture-MS | FSW = 0.0221
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT1G64550 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0374
| Unknown | ATGCN3 TRANSPORTER |
AT3G24090 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0290
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT3G62120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0489
| Unknown | TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN |
AT4G27640 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0246
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT4G34450 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0274
| Unknown | COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE |
AT3G44340 | PredictedAffinity Capture-Western | FSW = 0.0307
| Unknown | CEF (CLONE EIGHTY-FOUR) PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT4G31480 | PredictedCo-purification | FSW = 0.0169
| Unknown | COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE |
AT1G05520 | PredictedCo-purification | FSW = 0.0403
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT1G14640 | Predictedinteraction predictioninterologs mappingtwo hybrid | FSW = 0.0189
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
AT3G60860 | Predictedin vivoPhylogenetic profile methodCo-expression | FSW = 0.5153
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT5G09350 | Predictedsynthetic growth defect | FSW = 0.0463
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT1G51160 | PredictedSynthetic Lethality | FSW = 0.0317
| Unknown | SYNBINDIN PUTATIVE |
AT3G25100 | PredictedSynthetic Lethality | FSW = 0.0107
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT1G12730 | PredictedSynthetic Lethality | FSW = 0.0195
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT4G16630 | PredictedSynthetic Lethality | FSW = 0.0475
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT1G58440 | PredictedSynthetic Lethality | FSW = 0.0254
| Unknown | XF1 SQUALENE MONOOXYGENASE |
AT1G66960 | PredictedSynthetic Lethality | FSW = 0.0114
| Unknown | LUPEOL SYNTHASE PUTATIVE / 23-OXIDOSQUALENE-TRITERPENOID CYCLASE PUTATIVE |
AT2G34980 | PredictedSynthetic Lethality | FSW = 0.0113
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT1G12040 | PredictedSynthetic Lethality | FSW = 0.0220
| Unknown | LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CELL WALL |
AT2G18220 | PredictedSynthetic Lethality | FSW = 0.0507
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT1G52980 | PredictedSynthetic Lethality | FSW = 0.0458
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT4G18900 | PredictedSynthetic Lethality | FSW = 0.0145
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22980 | PredictedSynthetic Lethality | FSW = 0.0296
| Unknown | ELONGATION FACTOR TU FAMILY PROTEIN |
AT4G01560 | PredictedSynthetic Lethality | FSW = 0.0561
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT3G56120 | PredictedSynthetic LethalityCo-expression | FSW = 0.0338
| Unknown | MET-10+ LIKE FAMILY PROTEIN |
AT1G15420 | PredictedSynthetic Lethality | FSW = 0.0287
| Unknown | UNKNOWN PROTEIN |
AT5G66100 | Predictedinteraction prediction | FSW = 0.0070
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT4G14160 | Predictedinteraction prediction | FSW = 0.0581
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT4G00660 | Predictedinteraction prediction | FSW = 0.0165
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT4G15930 | Predictedinteraction prediction | FSW = 0.0178
| Unknown | MICROTUBULE MOTOR |
AT5G50430 | Predictedinteraction prediction | FSW = 0.0386
| Unknown | UBC33 (UBIQUITIN-CONJUGATING ENZYME 33) UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454