Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G58440 - ( XF1 squalene monooxygenase )
16 Proteins interacs with AT1G58440Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0231
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G07420![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0722
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT1G11680![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0737
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT5G52640![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G48570![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0482
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT PUTATIVE |
AT1G20970 | PredictedAffinity Capture-MS | FSW = 0.1196
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
AT2G17520![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0328
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT1G10030![]() ![]() ![]() ![]() | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.2032
| Unknown | ERG28 (ARABIDOPSIS HOMOLOG OF YEAST ERGOSTEROL28) |
AT3G62120![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2159
| Unknown | TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN |
AT1G18720![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.2000
| Unknown | UNKNOWN PROTEIN |
AT1G01960![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0254
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT5G24150![]() ![]() ![]() ![]() | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4545
| Unknown | SQP1 SQUALENE MONOOXYGENASE |
AT5G24160![]() ![]() ![]() ![]() | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4545
| Unknown | SQE6 (SQUALENE MONOXYGENASE 6) FAD BINDING / OXIDOREDUCTASE/ SQUALENE MONOOXYGENASE |
AT2G22830![]() ![]() ![]() ![]() | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2105
| Unknown | SQE2 (SQUALENE EPOXIDASE 2) FAD BINDING / OXIDOREDUCTASE/ SQUALENE MONOOXYGENASE |
AT5G24140![]() ![]() ![]() ![]() | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4545
| Unknown | SQP2 FAD BINDING / OXIDOREDUCTASE/ SQUALENE MONOOXYGENASE |
AT4G37760![]() ![]() ![]() ![]() | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5926
| Unknown | SQE3 (SQUALENE EPOXIDASE 3) SQUALENE MONOOXYGENASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454