Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G11680 - ( CYP51G1 (CYTOCHROME P450 51G1) oxygen binding / sterol 14-demethylase )
78 Proteins interacs with AT1G11680Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G23630 | PredictedSynthetic Lethality | FSW = 0.0275
| Class C:plasma membraneendoplasmic reticulum | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT4G14880 | PredictedAffinity Capture-MS | FSW = 0.0241
| Class C:plasma membrane | OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE |
AT1G16920 | PredictedSynthetic Lethality | FSW = 0.0063
| Class C:plasma membrane | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
AT3G63130 | PredictedSynthetic Lethality | FSW = 0.0049
| Class C:plasma membrane | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING |
AT4G08690 | PredictedSynthetic Lethality | FSW = 0.0184
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G22180 | PredictedSynthetic Lethality | FSW = 0.0268
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G63110 | PredictedSynthetic Lethality | FSW = 0.0248
| Class C:plasma membrane | CELL DIVISION CYCLE PROTEIN-RELATED |
AT1G06400 | PredictedSynthetic Lethality | FSW = 0.0124
| Class C:plasma membrane | ARA-2 GTP BINDING |
AT3G25540 | Predictedinteraction prediction | FSW = 0.0397
| Class C:plasma membrane | LAG1 |
AT1G13120 | PredictedSynthetic Lethality | FSW = 0.0123
| Class C:plasma membrane | EMB1745 (EMBRYO DEFECTIVE 1745) |
AT2G19760 | PredictedSynthetic Lethality | FSW = 0.0163
| Class C:plasma membrane | PRF1 (PROFILIN 1) ACTIN BINDING |
AT1G20970 | PredictedSynthetic Lethality | FSW = 0.0434
| Class C:plasma membrane | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
AT4G01320 | Predictedtwo hybridinteraction prediction | FSW = 0.0372
| Class C:endoplasmic reticulum | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT3G07140 | PredictedSynthetic Lethality | FSW = 0.0147
| Class C:endoplasmic reticulum | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT1G01020 | PredictedSynthetic Lethalitytwo hybrid | FSW = 0.0212
| Class C:endoplasmic reticulum | ARV1 |
AT2G07050 | PredictedSynthetic Lethality | FSW = 0.0220
| Unknown | CAS1 (CYCLOARTENOL SYNTHASE 1) CYCLOARTENOL SYNTHASE |
AT2G30710 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0304
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT2G43750 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | OASB (O-ACETYLSERINE (THIOL) LYASE B) CYSTEINE SYNTHASE |
AT2G31170 | PredictedSynthetic Lethality | FSW = 0.0023
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G48890 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0125
| Unknown | ATMP2 HEME BINDING |
AT1G07420 | PredictedSynthetic Rescue | FSW = 0.1171
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT4G07950 | PredictedSynthetic Lethality | FSW = 0.0151
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT1G01210 | PredictedSynthetic Lethality | FSW = 0.0191
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT5G27720 | PredictedSynthetic Lethality | FSW = 0.0035
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT4G26600 | PredictedSynthetic Lethality | FSW = 0.0088
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT1G20580 | PredictedSynthetic Lethality | FSW = 0.0074
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G05210 | PredictedSynthetic Lethality | FSW = 0.0231
| Unknown | NUCLEOLAR MATRIX PROTEIN-RELATED |
AT5G55920 | PredictedSynthetic Lethality | FSW = 0.0153
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G07050 | PredictedSynthetic Lethality | FSW = 0.0202
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT2G27750 | PredictedSynthetic Lethality | FSW = 0.0123
| Unknown | NUCLEOLAR MATRIX PROTEIN-RELATED |
AT1G07370 | PredictedSynthetic Lethality | FSW = 0.0127
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT1G29880 | PredictedSynthetic Lethality | FSW = 0.0116
| Unknown | GLYCYL-TRNA SYNTHETASE / GLYCINE--TRNA LIGASE |
AT2G44950 | PredictedSynthetic Lethality | FSW = 0.0131
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT4G31180 | PredictedSynthetic Lethality | FSW = 0.0169
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
AT3G02580 | PredictedSynthetic Rescue | FSW = 0.0385
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT1G10030 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.1266
| Unknown | ERG28 (ARABIDOPSIS HOMOLOG OF YEAST ERGOSTEROL28) |
AT5G45550 | PredictedSynthetic Lethality | FSW = 0.0258
| Unknown | MOB1/PHOCEIN FAMILY PROTEIN |
AT3G60360 | PredictedSynthetic Lethality | FSW = 0.0157
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT4G24520 | PredictedSynthetic LethalityEnriched domain pairCo-expression | FSW = 0.0152
| Unknown | ATR1 (ARABIDOPSIS P450 REDUCTASE 1) NADPH-HEMOPROTEIN REDUCTASE |
AT2G19770 | PredictedSynthetic Lethality | FSW = 0.0266
| Unknown | PRF5 (PROFILIN5) ACTIN BINDING / ACTIN MONOMER BINDING |
AT1G08750 | Predictedtwo hybridinteraction prediction | FSW = 0.0779
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT2G24940 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0129
| Unknown | ATMAPR2 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 2) HEME BINDING |
AT2G34980 | Predictedtwo hybridSynthetic Lethalityinteraction prediction | FSW = 0.0529
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT4G37760 | PredictedPhenotypic Enhancement | FSW = 0.0406
| Unknown | SQE3 (SQUALENE EPOXIDASE 3) SQUALENE MONOOXYGENASE |
AT1G13580 | Predictedtwo hybrid | FSW = 0.0190
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G15130 | PredictedSynthetic Lethality | FSW = 0.0094
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT1G20610 | PredictedSynthetic Lethality | FSW = 0.0220
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G55300 | PredictedSynthetic Lethality | FSW = 0.0121
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G79150 | PredictedSynthetic Lethality | FSW = 0.0297
| Unknown | BINDING |
AT2G20000 | PredictedSynthetic Lethality | FSW = 0.0084
| Unknown | HBT (HOBBIT) BINDING |
AT2G34770 | PredictedSynthetic Lethality | FSW = 0.0313
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G38700 | PredictedSynthetic Lethality | FSW = 0.0129
| Unknown | MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1) DIPHOSPHOMEVALONATE DECARBOXYLASE/ PROTEIN HOMODIMERIZATION |
AT3G06460 | Predictedtwo hybridinteraction prediction | FSW = 0.0202
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G47810 | PredictedSynthetic Lethality | FSW = 0.0169
| Unknown | MAG1 (MAIGO 1) HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G55380 | PredictedSynthetic Lethality | FSW = 0.0292
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT3G56120 | PredictedSynthetic Lethality | FSW = 0.0134
| Unknown | MET-10+ LIKE FAMILY PROTEIN |
AT4G16630 | PredictedSynthetic Lethality | FSW = 0.0225
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT4G18905 | PredictedSynthetic Lethality | FSW = 0.0048
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G14240 | PredictedSynthetic Lethality | FSW = 0.0132
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) PHOSDUCIN (INTERPROIPR001200) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) HAS 750 BLAST HITS TO 750 PROTEINS IN 282 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 486 FUNGI - 126 PLANTS - 51 VIRUSES - 0 OTHER EUKARYOTES - 85 (SOURCE NCBI BLINK) |
AT5G37340 | PredictedSynthetic Lethality | FSW = 0.0220
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
AT5G60510 | PredictedSynthetic Lethality | FSW = 0.0272
| Unknown | UNDECAPRENYL PYROPHOSPHATE SYNTHETASE FAMILY PROTEIN / UPP SYNTHETASE FAMILY PROTEIN |
AT1G58440 | PredictedPhenotypic Enhancement | FSW = 0.0737
| Unknown | XF1 SQUALENE MONOOXYGENASE |
AT1G55255 | PredictedSynthetic Lethality | FSW = 0.0074
| Unknown | XF1 SQUALENE MONOOXYGENASE |
AT1G16330 | PredictedSynthetic Lethality | FSW = 0.0163
| Unknown | CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT3G46460 | PredictedSynthetic Lethality | FSW = 0.0298
| Unknown | UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE |
AT1G12730 | PredictedSynthetic Lethality | FSW = 0.0286
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT4G26870 | PredictedSynthetic Lethality | FSW = 0.0231
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
AT1G33390 | PredictedSynthetic Lethality | FSW = 0.0068
| Unknown | HELICASE DOMAIN-CONTAINING PROTEIN |
AT1G66960 | PredictedSynthetic Lethality | FSW = 0.0350
| Unknown | LUPEOL SYNTHASE PUTATIVE / 23-OXIDOSQUALENE-TRITERPENOID CYCLASE PUTATIVE |
AT4G19050 | PredictedSynthetic Lethality | FSW = 0.0258
| Unknown | ATP BINDING / PROTEIN BINDING |
AT4G18900 | PredictedSynthetic Lethality | FSW = 0.0058
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G17570 | PredictedSynthetic Lethality | FSW = 0.0275
| Unknown | UNDECAPRENYL PYROPHOSPHATE SYNTHETASE FAMILY PROTEIN / UPP SYNTHETASE FAMILY PROTEIN |
AT3G06000 | PredictedSynthetic Lethality | FSW = 0.0110
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT5G22480 | PredictedSynthetic Lethality | FSW = 0.0100
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
AT5G08250 | PredictedGene fusion methodCo-expression | FSW = 0.1190
| Unknown | CYTOCHROME P450 FAMILY PROTEIN |
AT3G48290 | PredictedGene fusion method | FSW = 0.0992
| Unknown | CYP71A24 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G55580 | PredictedGene fusion method | FSW = 0.0744
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT3G15430 | PredictedGene fusion method | FSW = 0.0794
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454