Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G01210 - ( DNA-directed RNA polymerase III family protein )
19 Proteins interacs with AT1G01210Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.1246
| Class C:nucleus | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT4G07950 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile method | FSW = 0.3704
| Class C:nucleus | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT2G34450 | PredictedPhenotypic Enhancement | FSW = 0.1470
| Class C:nucleus | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT3G16980 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0556
| Class C:nucleus | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT1G53165 | PredictedPhenotypic Enhancement | FSW = 0.0447
| Class C:nucleus | ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G11680 | PredictedSynthetic Lethality | FSW = 0.0191
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT2G39480 | PredictedPhenotypic Enhancement | FSW = 0.1068
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G39100 | PredictedPhenotypic Enhancement | FSW = 0.1688
| Unknown | SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR |
AT1G66950 | Predictedtwo hybrid | FSW = 0.0455
| Unknown | PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.1005
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.0609
| Unknown | UNKNOWN PROTEIN |
AT4G24040 | PredictedPhenotypic Enhancement | FSW = 0.1633
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT5G52200 | PredictedPhenotypic Enhancement | FSW = 0.1306
| Unknown | UNKNOWN PROTEIN |
AT5G45140 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MStwo hybridEnriched domain pair | FSW = 0.0702
| Unknown | NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT2G17510 | PredictedAffinity Capture-MS | FSW = 0.0423
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
AT5G60040 | PredictedAffinity Capture-MSAffinity Capture-MSEnriched domain pair | FSW = 0.1420
| Unknown | NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING |
AT3G56640 | PredictedSynthetic Lethality | FSW = 0.0196
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT1G61010 | Predictedtwo hybrid | FSW = 0.0340
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
AT4G16265 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0833
| Unknown | NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454