Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G16265 - ( NRPB9B DNA binding / DNA-directed RNA polymerase/ nucleic acid binding / transcription regulator/ zinc ion binding )
27 Proteins interacs with AT4G16265Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20260 | Predictedtwo hybrid | FSW = 0.0264
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G49010 | PredictedSynthetic Lethality | FSW = 0.0286
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G11260 | Predictedtwo hybrid | FSW = 0.0164
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G22170 | Predictedtwo hybrid | FSW = 0.0290
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT5G15450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0900
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT2G36880 | Predictedtwo hybrid | FSW = 0.0157
| Unknown | MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT1G63110 | PredictedAffinity Capture-MS | FSW = 0.1986
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT4G07950 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.0667
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT1G75560 | Predictedtwo hybrid | FSW = 0.0415
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G16980 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0421
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT1G01210 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0833
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT2G30160 | Predictedtwo hybrid | FSW = 0.0266
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT1G72480 | PredictedAffinity Capture-RNA | FSW = 0.0365
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT5G41910 | PredictedAffinity Capture-MS | FSW = 0.0314
| Unknown | RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED |
AT1G34580 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G78970 | PredictedSynthetic Lethality | FSW = 0.0694
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G15790 | Predictedtwo hybrid | FSW = 0.0223
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G29680 | Predictedtwo hybrid | FSW = 0.1000
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT3G50845 | Predictedtwo hybrid | FSW = 0.0593
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF59 (INTERPROIPR002744) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS VACUOLAR SORTING SIGNAL BINDING (TAIRAT1G683102) HAS 415 BLAST HITS TO 414 PROTEINS IN 153 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 216 FUNGI - 86 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 72 (SOURCE NCBI BLINK) |
AT4G09150 | PredictedAffinity Capture-MS | FSW = 0.0410
| Unknown | T-COMPLEX PROTEIN 11 |
AT1G05830 | Predictedtwo hybrid | FSW = 0.1205
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT2G35390 | Predictedtwo hybrid | FSW = 0.0180
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.0471
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT4G00810 | Predictedtwo hybrid | FSW = 0.1061
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT5G49970 | PredictedAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.1190
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G19660 | PredictedAffinity Capture-RNA | FSW = 0.0523
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454