Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G63110 - ( cell division cycle protein-related )
42 Proteins interacs with AT1G63110Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G05590 | Predictedinteraction prediction | FSW = 0.0473
| Class C:plasma membrane | RPL18 (RIBOSOMAL PROTEIN L18) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G14850 | PredictedAffinity Capture-MS | FSW = 0.0178
| Class C:plasma membrane | NUP155 NUCLEOCYTOPLASMIC TRANSPORTER |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2773
| Class C:plasma membrane | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.0820
| Class C:plasma membrane | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT1G11680 | PredictedSynthetic Lethality | FSW = 0.0248
| Class C:plasma membrane | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT4G08690 | PredictedAffinity Capture-RNA | FSW = 0.2645
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.2532
| Class C:plasma membrane | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT3G48760 | Predictedtwo hybrid | FSW = 0.0234
| Class C:plasma membrane | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT3G07180 | PredictedAffinity Capture-Westerninterologs mappinginteraction prediction | FSW = 0.0356
| Unknown | GPI TRANSAMIDASE COMPONENT PIG-S-RELATED |
AT4G04910 | PredictedSynthetic Lethality | FSW = 0.0177
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G04940 | PredictedAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MS | FSW = 0.2893
| Unknown | SCRAMBLASE-RELATED |
AT5G15450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridAffinity Capture-WesternCo-purification | FSW = 0.1280
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G50670 | PredictedProtein-RNA | FSW = 0.0452
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G04870 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.0694
| Unknown | CLS (CARDIOLIPIN SYNTHASE) CARDIOLIPIN SYNTHASE/ PHOSPHATIDYLTRANSFERASE |
AT2G30160 | PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G19130 | Predictedinterologs mapping | FSW = 0.0454
| Unknown | GPI TRANSAMIDASE COMPONENT FAMILY PROTEIN / GAA1-LIKE FAMILY PROTEIN |
AT5G47720 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT4G17190 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.1060
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G05830 | PredictedAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MS | FSW = 0.3577
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G08750 | Predictedinterologs mapping | FSW = 0.0459
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G14310 | PredictedAffinity Capture-MS | FSW = 0.0237
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT1G21370 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridColocalization | FSW = 0.2177
| Unknown | UNKNOWN PROTEIN |
AT1G27840 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0602
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G57660 | Predictedtwo hybrid | FSW = 0.0073
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21E) |
AT1G10350 | Predictedtwo hybrid | FSW = 0.1947
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT2G31060 | PredictedAffinity Capture-MS | FSW = 0.1837
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT3G53880 | PredictedCo-purification | FSW = 0.2152
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G60860 | PredictedSynthetic Lethality | FSW = 0.0046
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G00810 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2759
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT4G14000 | PredictedSynthetic Lethality | FSW = 0.0133
| Unknown | UNKNOWN PROTEIN |
AT5G49970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MStwo hybrid | FSW = 0.1820
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT2G03667 | Predictedtwo hybrid | FSW = 0.0192
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G20410 | PredictedAffinity Capture-MS | FSW = 0.2953
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G29680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3425
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0436
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G05760 | PredictedAffinity Capture-Western | FSW = 0.1789
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT4G16265 | PredictedAffinity Capture-MS | FSW = 0.1986
| Unknown | NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G29910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2591
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT4G31770 | PredictedAffinity Capture-MS | FSW = 0.3010
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT4G39330 | Predictedtwo hybrid | FSW = 0.0223
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT1G12730 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1307
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454