Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G28950 - ( ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP binding )
66 Proteins interacs with AT4G28950| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G08710
   | PredictedAffinity Capture-MS | FSW = 0.1490
| Class C:plasma membrane | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT1G18540
| PredictedAffinity Capture-MS | FSW = 0.1355
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
| AT5G45420
| PredictedAffinity Capture-MS | FSW = 0.1546
| Class C:plasma membrane | MYB FAMILY TRANSCRIPTION FACTOR |
| AT3G47370
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1839
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
| AT5G62880
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1569
| Class C:plasma membrane | ARAC10 GTP BINDING |
| AT1G75840
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1088
| Class C:plasma membrane | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
| AT5G63680
| PredictedAffinity Capture-MS | FSW = 0.0224
| Class C:plasma membrane | PYRUVATE KINASE PUTATIVE |
| AT1G11250
| PredictedAffinity Capture-MS | FSW = 0.0896
| Class C:plasma membrane | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
| AT1G20090
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1097
| Class C:plasma membrane | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
| AT5G23900
| PredictedAffinity Capture-MS | FSW = 0.0411
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
| AT2G44690
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1620
| Class C:plasma membrane | ARAC9 GTP BINDING |
| AT5G45970
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0935
| Class C:plasma membrane | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
| AT4G24400
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2723
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
| AT1G20760
| PredictedAffinity Capture-MS | FSW = 0.2043
| Class C:plasma membrane | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT3G53870
| Predictedbiochemical | FSW = 0.0142
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT3G48040
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2068
| Class C:plasma membrane | ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP BINDING / GTPASE |
| AT5G61510
| PredictedAffinity Capture-MS | FSW = 0.0150
| Class C:plasma membrane | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT1G63110
| PredictedAffinity Capture-MS | FSW = 0.0820
| Class C:plasma membrane | CELL DIVISION CYCLE PROTEIN-RELATED |
| AT4G35020
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0722
| Class C:plasma membrane | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
| AT4G35950
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1633
| Class C:plasma membrane | ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING |
| AT2G47160
| PredictedAffinity Capture-MS | FSW = 0.1236
| Class C:plasma membrane | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
| AT3G46900
| PredictedAffinity Capture-MS | FSW = 0.0178
| Class C:plasma membrane | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
| AT4G30990
| PredictedAffinity Capture-MS | FSW = 0.1904
| Class C:golgi | BINDING |
| AT3G62870
| Predictedtwo hybrid | FSW = 0.0163
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT2G29990
| PredictedAffinity Capture-MS | FSW = 0.0474
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
| AT5G24400
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2612
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
| AT3G16950
| PredictedAffinity Capture-MS | FSW = 0.2028
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT2G25140
| PredictedAffinity Capture-MS | FSW = 0.0411
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT3G19160
| PredictedAffinity Capture-MS | FSW = 0.1060
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
| AT3G11630
| PredictedAffinity Capture-MS | FSW = 0.1253
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT1G64190
| PredictedSynthetic Lethality | FSW = 0.0137
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
| AT1G80030
| PredictedAffinity Capture-MS | FSW = 0.1512
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT1G70580
| PredictedAffinity Capture-MS | FSW = 0.0712
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
| AT2G23460
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2552
| Unknown | XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
| AT3G66656
| PredictedAffinity Capture-MS | FSW = 0.0496
| Unknown | AGL91 TRANSCRIPTION FACTOR |
| AT1G34065
| PredictedAffinity Capture-MS | FSW = 0.2056
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
| AT4G04870
| PredictedAffinity Capture-MS | FSW = 0.0828
| Unknown | CLS (CARDIOLIPIN SYNTHASE) CARDIOLIPIN SYNTHASE/ PHOSPHATIDYLTRANSFERASE |
| AT2G18450
| PredictedAffinity Capture-MS | FSW = 0.2759
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
| AT4G33720
| PredictedAffinity Capture-MS | FSW = 0.1070
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT2G38960
| Predictedbiochemical | FSW = 0.0104
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
| AT5G47720
| PredictedAffinity Capture-MS | FSW = 0.0368
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
| AT3G51300
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1072
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
| AT3G52580
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1978
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
| AT2G17800
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1257
| Unknown | ARAC1 GTP BINDING |
| AT3G12530
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2436
| Unknown | PSF2 |
| AT4G17190
| PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
| AT2G24040
| PredictedAffinity Capture-MS | FSW = 0.1556
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
| AT1G77990
| PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
| AT1G05785
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2333
| Unknown | GOT1-LIKE FAMILY PROTEIN |
| AT1G14310
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.3176
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
| AT1G20920
| PredictedAffinity Capture-MS | FSW = 0.2795
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT1G26140
| PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | UNKNOWN PROTEIN |
| AT1G33770
| PredictedAffinity Capture-MS | FSW = 0.1177
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT1G55730
| PredictedAffinity Capture-MS | FSW = 0.2851
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
| AT2G16740
| PredictedAffinity Capture-MS | FSW = 0.1752
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G21250
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2332
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
| AT2G35390
| PredictedAffinity Capture-MS | FSW = 0.1089
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
| AT3G47940
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1379
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT3G52390
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2400
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
| AT3G57140
| PredictedAffinity Capture-MS | FSW = 0.0411
| Unknown | PATATIN-RELATED |
| AT4G26810
| PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
| AT2G17620
| PredictedAffinity Capture-MS | FSW = 0.0850
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT3G23570
| PredictedAffinity Capture-MS | FSW = 0.2445
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT5G67380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2143
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT4G39330
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2028
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.1434
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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