Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G21250 - ( mannose 6-phosphate reductase (NADPH-dependent) putative )
105 Proteins interacs with AT2G21250Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.3661
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT1G20260 | PredictedPhenotypic Suppression | FSW = 0.0190
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.3416
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.1719
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.2294
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.3221
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.3602
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0493
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G20020 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.3488
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.2963
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G27770 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) CALCIUM CHANNEL/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.3532
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G65240 | PredictedAffinity Capture-MS | FSW = 0.0576
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT2G22780 | PredictedAffinity Capture-MS | FSW = 0.0660
| Unknown | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT3G03920 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.4357
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.1015
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.1233
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.2490
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G80030 | PredictedAffinity Capture-MS | FSW = 0.1814
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.3059
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.0865
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT5G51820 | PredictedPhenotypic Suppression | FSW = 0.0200
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G48860 | PredictedPhenotypic Suppression | FSW = 0.0208
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.4048
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.1066
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.3439
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT3G61430 | PredictedAffinity Capture-MS | FSW = 0.1414
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT4G28950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2332
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0078
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.2792
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G23900 | PredictedAffinity Capture-MS | FSW = 0.0335
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.3622
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT4G29900 | PredictedAffinity Capture-MS | FSW = 0.0233
| Unknown | ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT1G20760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1644
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G80050 | PredictedPhenotypic Suppression | FSW = 0.0190
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT2G37790 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0641
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G13980 | Predictedbiochemical | FSW = 0.0107
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.3513
| Unknown | HTA6 DNA BINDING |
AT5G54840 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | SGP1 GTP BINDING |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.3642
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.3205
| Unknown | HISTONE H2B PUTATIVE |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1962
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.4032
| Unknown | BINDING |
AT3G08730 | PredictedAffinity Capture-MS | FSW = 0.0947
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.4614
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.4163
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.4291
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.3761
| Unknown | PSF2 |
AT1G05910 | PredictedAffinity Capture-MS | FSW = 0.1011
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.3762
| Unknown | UNKNOWN PROTEIN |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.3751
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.3725
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G05785 | PredictedAffinity Capture-MS | FSW = 0.1593
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G08110 | Predictedinterologs mapping | FSW = 0.0370
| Unknown | LACTOYLGLUTATHIONE LYASE PUTATIVE / GLYOXALASE I PUTATIVE |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.3659
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0376
| Unknown | UNKNOWN PROTEIN |
AT1G53900 | PredictedAffinity Capture-MS | FSW = 0.1894
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.4302
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G80510 | PredictedPhenotypic Enhancement | FSW = 0.0180
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.1323
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G44150 | PredictedSynthetic Lethality | FSW = 0.0013
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.3325
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.3388
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.3315
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.3639
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.3182
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.4051
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT4G04700 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.3497
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT5G09290 | PredictedPhenotypic Suppression | FSW = 0.0062
| Unknown | 3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.3030
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G28470 | PredictedAffinity Capture-MS | FSW = 0.1014
| Unknown | TRANSPORTER |
AT5G44740 | Predictedbiochemical | FSW = 0.0058
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.2535
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G48710 | PredictedAffinity Capture-MS | FSW = 0.1285
| Unknown | UBIQUITIN-RELATED |
AT5G67380 | PredictedAffinity Capture-MS | FSW = 0.1694
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT2G37770 | PredictedPhenotypic EnhancementGene neighbors methodPhylogenetic profile method | FSW = 0.2125
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.3237
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G57550 | PredictedAffinity Capture-MS | FSW = 0.1328
| Unknown | AGK2 (GUANYLATE KINASE) GUANYLATE KINASE |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.2955
| Unknown | ATATG18A |
AT4G24710 | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.4255
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G01770 | PredictedPhenotypic Suppression | FSW = 0.0148
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G04420 | PredictedAffinity Capture-MS | FSW = 0.0053
| Unknown | KELCH REPEAT-CONTAINING PROTEIN |
AT5G15070 | PredictedAffinity Capture-MS | FSW = 0.0379
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.2569
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.0478
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.3261
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.2886
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G60340 | PredictedSynthetic Rescue | FSW = 0.0274
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT2G37760 | PredictedPhenotypic EnhancementGene neighbors methodPhylogenetic profile method | FSW = 0.1110
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G21260 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.2253
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT1G60680 | PredictedPhylogenetic profile method | FSW = 0.0777
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G53880 | PredictedPhylogenetic profile method | FSW = 0.1167
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G62420 | PredictedPhylogenetic profile method | FSW = 0.2399
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G60710 | PredictedPhylogenetic profile method | FSW = 0.0899
| Unknown | ATB2 OXIDOREDUCTASE |
AT1G59960 | PredictedPhylogenetic profile method | FSW = 0.1277
| Unknown | ALDO/KETO REDUCTASE PUTATIVE |
AT1G60730 | PredictedPhylogenetic profile method | FSW = 0.0627
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G10810 | PredictedPhylogenetic profile method | FSW = 0.1078
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G59950 | PredictedPhylogenetic profile method | FSW = 0.1739
| Unknown | ALDO/KETO REDUCTASE PUTATIVE |
AT5G01670 | PredictedPhylogenetic profile method | FSW = 0.1181
| Unknown | ALDOSE REDUCTASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454