Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80030 - ( DNAJ heat shock protein putative )
49 Proteins interacs with AT1G80030Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09820 | PredictedSynthetic Lethality | FSW = 0.0172
| Class C:plastid | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.1869
| Class C:plastid | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT3G03920 | PredictedAffinity Capture-MS | FSW = 0.0402
| Class C:plastid | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.1945
| Class C:plastid | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT1G07790 | PredictedSynthetic Lethality | FSW = 0.0191
| Class C:plastid | HTB1 DNA BINDING |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.1106
| Class C:plastid | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.1062
| Class C:plastid | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.0823
| Class C:plastid | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT1G17745 | Predictedtwo hybrid | FSW = 0.0128
| Class C:plastid | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
AT5G63980 | PredictedAffinity Capture-MS | FSW = 0.0242
| Class C:plastid | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
AT1G18870 | PredictedSynthetic Lethality | FSW = 0.0063
| Class C:plastid | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.0975
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT3G12580 | PredictedAffinity Capture-MS | FSW = 0.0636
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.0783
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT4G37910 | PredictedAffinity Capture-WesternCo-purificationReconstituted Complex | FSW = 0.0052
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.1512
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT1G20760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1458
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT5G42790 | PredictedSynthetic Lethality | FSW = 0.0058
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G48130 | PredictedSynthetic Lethality | FSW = 0.0205
| Unknown | ATPER1 ANTIOXIDANT/ THIOREDOXIN PEROXIDASE |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0745
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G50670 | Predictedtwo hybrid | FSW = 0.0089
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1361
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT4G25780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0736
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G20950 | PredictedSynthetic Lethality | FSW = 0.0162
| Unknown | GLYCOSYL HYDROLASE FAMILY 3 PROTEIN |
AT3G52580 | Predictedsynthetic growth defectinterologs mapping | FSW = 0.1562
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT4G10920 | PredictedAffinity Capture-MS | FSW = 0.0835
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT4G29430 | PredictedAffinity Capture-MS | FSW = 0.1339
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G68530 | PredictedSynthetic Lethality | FSW = 0.0088
| Unknown | KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
AT1G14310 | PredictedAffinity Capture-MS | FSW = 0.0929
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.1056
| Unknown | UNKNOWN PROTEIN |
AT1G53900 | PredictedAffinity Capture-MS | FSW = 0.0702
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.2381
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.1814
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.1380
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1121
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT2G31060 | PredictedSynthetic Lethality | FSW = 0.0242
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT3G01590 | PredictedSynthetic Lethality | FSW = 0.0162
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT3G08700 | PredictedSynthetic Lethality | FSW = 0.0093
| Unknown | UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT3G19940 | PredictedSynthetic Lethality | FSW = 0.1011
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.1817
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G01770 | PredictedSynthetic Lethality | FSW = 0.0158
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G61290 | PredictedSynthetic Lethality | FSW = 0.0181
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G71010 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT4G26780 | PredictedAffinity Capture-Western | FSW = 0.0158
| Unknown | AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
AT2G03410 | Predictedtwo hybrid | FSW = 0.0063
| Unknown | MO25 FAMILY PROTEIN |
AT1G06580 | PredictedGene fusion method | FSW = 0.0515
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT4G01030 | PredictedGene fusion method | FSW = 0.0564
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT2G37320 | PredictedGene fusion method | FSW = 0.0564
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454