Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12580 - ( HSP70 (heat shock protein 70) ATP binding )

133 Proteins interacs with AT3G12580
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G67090

Experimental

Affinity Capture-Western

FSW = 0.0076

Class B:

vacuole

plastid

plasma membrane

peroxisome

mitochondrion

RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) COPPER ION BINDING / RIBULOSE-BISPHOSPHATE CARBOXYLASE
AT4G17750

Experimental

two hybrid

FSW = 0.0232

Class B:

vacuole

plasma membrane

nucleus

mitochondrion

HSF1 (HEAT SHOCK FACTOR 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT4G11260

Experimental

interaction detection method

pull down

FSW = 0.0721

Unknown

SGT1B PROTEIN BINDING
AT3G07370

Experimental

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0166

Unknown

CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE
AT3G01280

Predicted

Affinity Capture-MS

FSW = 0.0465

Class C:

vacuole

plasma membrane

mitochondrion

VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT5G02500

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.0898

Class C:

vacuole

plasma membrane

HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING
AT3G49910

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1958

Class C:

vacuole

plasma membrane

60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G36160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2920

Class C:

vacuole

plasma membrane

40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT3G49010

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0533

Class C:

vacuole

plasma membrane

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09440

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0284

Class C:

vacuole

plasma membrane

HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3)
AT1G54270

Predicted

Affinity Capture-MS

FSW = 0.0782

Class C:

vacuole

plasma membrane

EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT1G56340

Predicted

two hybrid

two hybrid

FSW = 0.0188

Class C:

vacuole

mitochondrion

CRT1 (CALRETICULIN 1) CALCIUM ION BINDING / UNFOLDED PROTEIN BINDING
AT2G30970

Predicted

Affinity Capture-MS

in vitro

in vivo

FSW = 0.0563

Class C:

vacuole

mitochondrion

ASP1 (ASPARTATE AMINOTRANSFERASE 1) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE
AT3G07180

Predicted

two hybrid

FSW = 0.0119

Class C:

vacuole

GPI TRANSAMIDASE COMPONENT PIG-S-RELATED
AT3G13080

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1110

Class C:

vacuole

ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE
AT1G18070

Predicted

Co-purification

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0334

Class C:

vacuole

EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE
AT4G14800

Predicted

Affinity Capture-MS

FSW = 0.0235

Class C:

vacuole

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G56030

Predicted

Affinity Capture-MS

FSW = 0.0711

Class C:

plasma membrane

mitochondrion

HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT3G61650

Predicted

Synthetic Lethality

FSW = 0.0257

Class C:

plasma membrane

mitochondrion

TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT3G61430

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2730

Class C:

plasma membrane

mitochondrion

PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT1G18540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2990

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT1G16030

Predicted

Phenotypic Enhancement

Affinity Capture-Western

interologs mapping

Phenotypic Enhancement

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.1352

Class C:

plasma membrane

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT5G20010

Predicted

Affinity Capture-MS

FSW = 0.2653

Class C:

plasma membrane

RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G22060

Predicted

Phenotypic Enhancement

Affinity Capture-Western

Affinity Capture-Western

biochemical

biochemical

co-fractionation

Co-fractionation

Synthetic Lethality

interologs mapping

Affinity Capture-Western

Phenotypic Enhancement

Co-purification

interologs mapping

interaction prediction

FSW = 0.0631

Class C:

plasma membrane

ATJ2 PROTEIN BINDING
AT1G49340

Predicted

Synthetic Lethality

FSW = 0.0053

Class C:

plasma membrane

ATPI4K ALPHA 1-PHOSPHATIDYLINOSITOL 4-KINASE/ INOSITOL OR PHOSPHATIDYLINOSITOL KINASE
AT5G52640

Predicted

interaction prediction

Affinity Capture-MS

interologs mapping

Shared biological function

Co-expression

FSW = 0.0426

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G63290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3529

Class C:

plasma membrane

RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE
AT1G11250

Predicted

Affinity Capture-MS

FSW = 0.2680

Class C:

plasma membrane

SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT1G55690

Predicted

Affinity Capture-MS

FSW = 0.1218

Class C:

plasma membrane

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT4G24400

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1710

Class C:

plasma membrane

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT2G20580

Predicted

two hybrid

FSW = 0.0326

Class C:

plasma membrane

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT1G20760

Predicted

Affinity Capture-MS

FSW = 0.3226

Class C:

plasma membrane

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT1G79920

Predicted

Affinity Capture-MS

in vivo

FSW = 0.0462

Class C:

plasma membrane

ATP BINDING
AT1G62740

Predicted

Phenotypic Enhancement

Reconstituted Complex

two hybrid

Affinity Capture-Western

FSW = 0.0759

Class C:

plasma membrane

STRESS-INDUCIBLE PROTEIN PUTATIVE
AT1G79930

Predicted

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

co-fractionation

Co-fractionation

Reconstituted Complex

Co-purification

Affinity Capture-Western

biochemical

FSW = 0.1143

Class C:

plasma membrane

HSP91 ATP BINDING
AT4G35310

Predicted

Affinity Capture-MS

FSW = 0.3493

Class C:

plasma membrane

CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G02490

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1236

Class C:

plasma membrane

HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT2G31170

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2647

Class C:

mitochondrion

SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT5G48030

Predicted

in vivo

Affinity Capture-MS

in vivo

FSW = 0.0161

Class C:

mitochondrion

GFA2 (GAMETOPHYTIC FACTOR 2) HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT4G04870

Predicted

Affinity Capture-MS

FSW = 0.0240

Class C:

mitochondrion

CLS (CARDIOLIPIN SYNTHASE) CARDIOLIPIN SYNTHASE/ PHOSPHATIDYLTRANSFERASE
AT2G18450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3064

Class C:

mitochondrion

SDH1-2 SUCCINATE DEHYDROGENASE
AT4G10040

Predicted

Affinity Capture-MS

in vitro

in vivo

FSW = 0.0167

Class C:

mitochondrion

CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT3G20390

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3517

Unknown

ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT5G24400

Predicted

Affinity Capture-MS

FSW = 0.2492

Unknown

EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC
AT1G51040

Predicted

Affinity Capture-MS

FSW = 0.1535

Unknown

PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT5G53480

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.0154

Unknown

IMPORTIN BETA-2 PUTATIVE
AT2G33340

Predicted

Co-purification

FSW = 0.0081

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G56410

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.0514

Unknown

ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2) ATP BINDING
AT1G21640

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2484

Unknown

NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT3G19160

Predicted

Affinity Capture-MS

FSW = 0.1627

Unknown

ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE
AT5G13050

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0610

Unknown

5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
AT1G80030

Predicted

Affinity Capture-MS

FSW = 0.0636

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT3G11630

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0828

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT4G04470

Predicted

two hybrid

two hybrid

FSW = 0.0075

Unknown

PMP22
AT3G55620

Predicted

Affinity Capture-MS

FSW = 0.0242

Unknown

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT5G03720

Predicted

Affinity Capture-MS

in vitro

in vivo

FSW = 0.0271

Unknown

AT-HSFA3 DNA BINDING / TRANSCRIPTION FACTOR
AT2G47620

Predicted

Affinity Capture-MS

FSW = 0.0309

Unknown

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT3G06720

Predicted

interologs mapping

interaction prediction

FSW = 0.0167

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT1G74060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1529

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G26600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2069

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT3G19840

Predicted

in vitro

FSW = 0.0334

Unknown

FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT2G41500

Predicted

Affinity Capture-Western

FSW = 0.0139

Unknown

EMB2776 NUCLEOTIDE BINDING
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0072

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G18040

Predicted

two hybrid

two hybrid

FSW = 0.0064

Unknown

CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE
AT2G37470

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0898

Unknown

HISTONE H2B PUTATIVE
AT3G22830

Predicted

Synthetic Rescue

Synthetic Rescue

Phenotypic Suppression

FSW = 0.0662

Unknown

AT-HSFA6B DNA BINDING / TRANSCRIPTION FACTOR
AT2G13650

Predicted

Affinity Capture-MS

FSW = 0.0546

Unknown

GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT1G76400

Predicted

Affinity Capture-MS

FSW = 0.0448

Unknown

RIBOPHORIN I FAMILY PROTEIN
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.1525

Unknown

A37 PROTEIN HETERODIMERIZATION
AT5G48070

Predicted

two hybrid

FSW = 0.0062

Unknown

XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20) HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE
AT4G33150

Predicted

Affinity Capture-MS

FSW = 0.0271

Unknown

LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE BIFUNCTIONAL ENZYME
AT3G52580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0910

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT1G16470

Predicted

two hybrid

FSW = 0.0198

Unknown

PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G25980

Predicted

two hybrid

two hybrid

FSW = 0.0180

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT3G12530

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1600

Unknown

PSF2
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0209

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT4G26840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0150

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT4G21710

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0084

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G79210

Predicted

two hybrid

FSW = 0.0489

Unknown

20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT3G46220

Predicted

two hybrid

two hybrid

FSW = 0.0166

Unknown

UNKNOWN PROTEIN
AT3G48780

Predicted

two hybrid

two hybrid

FSW = 0.0030

Unknown

SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE
AT3G61740

Predicted

Phenotypic Suppression

Phenotypic Enhancement

FSW = 0.0158

Unknown

SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G48655

Predicted

two hybrid

FSW = 0.0069

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G04130

Predicted

Reconstituted Complex

FSW = 0.0515

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT1G29940Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0112

Unknown

NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT1G49760

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0186

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G54290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2625

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT2G03040

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2482

Unknown

TRANSMEMBRANE PROTEIN-RELATED
AT2G16090

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2949

Unknown

ZINC FINGER PROTEIN-RELATED
AT2G16740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2385

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G19910

Predicted

Affinity Capture-Western

FSW = 0.1393

Unknown

RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G20560

Predicted

Reconstituted Complex

Affinity Capture-Western

Protein-peptide

Reconstituted Complex

interaction prediction

FSW = 0.0451

Unknown

DNAJ HEAT SHOCK FAMILY PROTEIN
AT2G35390

Predicted

Affinity Capture-MS

FSW = 0.0381

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G37540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2898

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G05960

Predicted

Affinity Capture-MS

FSW = 0.1001

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G03530

Predicted

Affinity Capture-MS

FSW = 0.0546

Unknown

NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G04730Predicted

Co-purification

FSW = 0.0213

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G29990

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0110

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G74310

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0604

Unknown

ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G41530

Predicted

Affinity Capture-MS

FSW = 0.0683

Unknown

SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT3G01090

Predicted

Affinity Capture-MS

FSW = 0.0311

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G03590

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1533

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT3G08650

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0411

Unknown

METAL TRANSPORTER FAMILY PROTEIN
AT3G11900

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0875

Unknown

ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER
AT3G59410

Predicted

Affinity Capture-MS

FSW = 0.0837

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G38630

Predicted

Affinity Capture-MS

FSW = 0.0244

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G02150

Predicted

Affinity Capture-Western

Phenotypic Enhancement

FSW = 0.0545

Unknown

BINDING
AT5G10270

Predicted

Affinity Capture-MS

FSW = 0.0215

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G24410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0668

Unknown

GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED
AT5G42190

Predicted

Affinity Capture-MS

FSW = 0.0095

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G46150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2767

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G48640

Predicted

Affinity Capture-Western

FSW = 0.0161

Unknown

CYCLIN FAMILY PROTEIN
AT5G55190

Predicted

Affinity Capture-MS

FSW = 0.0224

Unknown

RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G60870

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0524

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT5G67380

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1841

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT4G36800

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2646

Unknown

RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE
AT5G02230

Predicted

Affinity Capture-MS

FSW = 0.0162

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT5G06420

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3341

Unknown

ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G16750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1744

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G17000

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2086

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G54200

Predicted

Affinity Capture-MS

FSW = 0.2902

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT3G51890

Predicted

Affinity Capture-MS

in vitro

FSW = 0.0075

Unknown

PROTEIN BINDING / STRUCTURAL MOLECULE
AT5G25530

Predicted

Affinity Capture-MS

FSW = 0.0579

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT2G32850

Predicted

Affinity Capture-MS

in vitro

in vivo

FSW = 0.0343

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT2G15790

Predicted

in vitro

FSW = 0.0187

Unknown

SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G27530

Predicted

two hybrid

FSW = 0.0093

Unknown

GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER
AT3G07200

Predicted

two hybrid

FSW = 0.0078

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G12550

Predicted

two hybrid

FSW = 0.0062

Unknown

OXIDOREDUCTASE FAMILY PROTEIN
AT4G30890

Predicted

interaction prediction

FSW = 0.0114

Unknown

UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT5G62600

Predicted

interaction prediction

FSW = 0.0150

Unknown

TRANSPORTIN-SR-RELATED
AT1G03360

Predicted

interaction prediction

FSW = 0.0091

Unknown

ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) RNA BINDING / EXONUCLEASE
AT1G51965

Predicted

Gene fusion method

FSW = 0.0266

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT3G29340

Predicted

Gene fusion method

FSW = 0.0464

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454