Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12580 - ( HSP70 (heat shock protein 70) ATP binding )
133 Proteins interacs with AT3G12580Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G67090 | ExperimentalAffinity Capture-Western | FSW = 0.0076
| Class B:vacuoleplastidplasma membraneperoxisomemitochondrion | RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) COPPER ION BINDING / RIBULOSE-BISPHOSPHATE CARBOXYLASE |
AT4G17750 | Experimentaltwo hybrid | FSW = 0.0232
| Class B:vacuoleplasma membranenucleusmitochondrion | HSF1 (HEAT SHOCK FACTOR 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT4G11260 | Experimentalinteraction detection methodpull down | FSW = 0.0721
| Unknown | SGT1B PROTEIN BINDING |
AT3G07370 | ExperimentalAffinity Capture-WesternReconstituted Complex | FSW = 0.0166
| Unknown | CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE |
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.0465
| Class C:vacuoleplasma membranemitochondrion | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT5G02500 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.0898
| Class C:vacuoleplasma membrane | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING |
AT3G49910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1958
| Class C:vacuoleplasma membrane | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G36160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2920
| Class C:vacuoleplasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G49010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0533
| Class C:vacuoleplasma membrane | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09440 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0284
| Class C:vacuoleplasma membrane | HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3) |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0782
| Class C:vacuoleplasma membrane | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G56340 | Predictedtwo hybridtwo hybrid | FSW = 0.0188
| Class C:vacuolemitochondrion | CRT1 (CALRETICULIN 1) CALCIUM ION BINDING / UNFOLDED PROTEIN BINDING |
AT2G30970 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0563
| Class C:vacuolemitochondrion | ASP1 (ASPARTATE AMINOTRANSFERASE 1) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE |
AT3G07180 | Predictedtwo hybrid | FSW = 0.0119
| Class C:vacuole | GPI TRANSAMIDASE COMPONENT PIG-S-RELATED |
AT3G13080 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1110
| Class C:vacuole | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT1G18070 | PredictedCo-purificationReconstituted ComplexAffinity Capture-Western | FSW = 0.0334
| Class C:vacuole | EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0235
| Class C:vacuole | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0711
| Class C:plasma membranemitochondrion | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT3G61650 | PredictedSynthetic Lethality | FSW = 0.0257
| Class C:plasma membranemitochondrion | TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT3G61430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2730
| Class C:plasma membranemitochondrion | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT1G18540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2990
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT1G16030 | PredictedPhenotypic EnhancementAffinity Capture-Westerninterologs mappingPhenotypic EnhancementShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.1352
| Class C:plasma membrane | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G20010 | PredictedAffinity Capture-MS | FSW = 0.2653
| Class C:plasma membrane | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G22060 | PredictedPhenotypic EnhancementAffinity Capture-WesternAffinity Capture-Westernbiochemicalbiochemicalco-fractionationCo-fractionationSynthetic Lethalityinterologs mappingAffinity Capture-WesternPhenotypic EnhancementCo-purificationinterologs mappinginteraction prediction | FSW = 0.0631
| Class C:plasma membrane | ATJ2 PROTEIN BINDING |
AT1G49340 | PredictedSynthetic Lethality | FSW = 0.0053
| Class C:plasma membrane | ATPI4K ALPHA 1-PHOSPHATIDYLINOSITOL 4-KINASE/ INOSITOL OR PHOSPHATIDYLINOSITOL KINASE |
AT5G52640 | Predictedinteraction predictionAffinity Capture-MSinterologs mappingShared biological functionCo-expression | FSW = 0.0426
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G63290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3529
| Class C:plasma membrane | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.2680
| Class C:plasma membrane | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT1G55690 | PredictedAffinity Capture-MS | FSW = 0.1218
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G24400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1710
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT2G20580 | Predictedtwo hybrid | FSW = 0.0326
| Class C:plasma membrane | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G20760 | PredictedAffinity Capture-MS | FSW = 0.3226
| Class C:plasma membrane | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G79920 | PredictedAffinity Capture-MSin vivo | FSW = 0.0462
| Class C:plasma membrane | ATP BINDING |
AT1G62740 | PredictedPhenotypic EnhancementReconstituted Complextwo hybridAffinity Capture-Western | FSW = 0.0759
| Class C:plasma membrane | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT1G79930 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complexco-fractionationCo-fractionationReconstituted ComplexCo-purificationAffinity Capture-Westernbiochemical | FSW = 0.1143
| Class C:plasma membrane | HSP91 ATP BINDING |
AT4G35310 | PredictedAffinity Capture-MS | FSW = 0.3493
| Class C:plasma membrane | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G02490 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1236
| Class C:plasma membrane | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT2G31170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2647
| Class C:mitochondrion | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT5G48030 | Predictedin vivoAffinity Capture-MSin vivo | FSW = 0.0161
| Class C:mitochondrion | GFA2 (GAMETOPHYTIC FACTOR 2) HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT4G04870 | PredictedAffinity Capture-MS | FSW = 0.0240
| Class C:mitochondrion | CLS (CARDIOLIPIN SYNTHASE) CARDIOLIPIN SYNTHASE/ PHOSPHATIDYLTRANSFERASE |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3064
| Class C:mitochondrion | SDH1-2 SUCCINATE DEHYDROGENASE |
AT4G10040 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0167
| Class C:mitochondrion | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3517
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.2492
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.1535
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT5G53480 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0154
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT2G33340 | PredictedCo-purification | FSW = 0.0081
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G56410 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.0514
| Unknown | ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2) ATP BINDING |
AT1G21640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2484
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.1627
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT5G13050 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0610
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT1G80030 | PredictedAffinity Capture-MS | FSW = 0.0636
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G11630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0828
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT4G04470 | Predictedtwo hybridtwo hybrid | FSW = 0.0075
| Unknown | PMP22 |
AT3G55620 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT5G03720 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0271
| Unknown | AT-HSFA3 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G47620 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT3G06720 | Predictedinterologs mappinginteraction prediction | FSW = 0.0167
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT1G74060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1529
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2069
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G19840 | Predictedin vitro | FSW = 0.0334
| Unknown | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
AT2G41500 | PredictedAffinity Capture-Western | FSW = 0.0139
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G18040 | Predictedtwo hybridtwo hybrid | FSW = 0.0064
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT2G37470 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0898
| Unknown | HISTONE H2B PUTATIVE |
AT3G22830 | PredictedSynthetic RescueSynthetic RescuePhenotypic Suppression | FSW = 0.0662
| Unknown | AT-HSFA6B DNA BINDING / TRANSCRIPTION FACTOR |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.0546
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT1G76400 | PredictedAffinity Capture-MS | FSW = 0.0448
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.1525
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT5G48070 | Predictedtwo hybrid | FSW = 0.0062
| Unknown | XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20) HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT4G33150 | PredictedAffinity Capture-MS | FSW = 0.0271
| Unknown | LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE BIFUNCTIONAL ENZYME |
AT3G52580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0910
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT1G16470 | Predictedtwo hybrid | FSW = 0.0198
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G25980 | Predictedtwo hybridtwo hybrid | FSW = 0.0180
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT3G12530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1600
| Unknown | PSF2 |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT4G26840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0150
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT4G21710 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0084
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G79210 | Predictedtwo hybrid | FSW = 0.0489
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT3G46220 | Predictedtwo hybridtwo hybrid | FSW = 0.0166
| Unknown | UNKNOWN PROTEIN |
AT3G48780 | Predictedtwo hybridtwo hybrid | FSW = 0.0030
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
AT3G61740 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0158
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G48655 | Predictedtwo hybrid | FSW = 0.0069
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G04130 | PredictedReconstituted Complex | FSW = 0.0515
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G29940 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0112
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT1G49760 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0186
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G54290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2625
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT2G03040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2482
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16090 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2949
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2385
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-Western | FSW = 0.1393
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G20560 | PredictedReconstituted ComplexAffinity Capture-WesternProtein-peptideReconstituted Complexinteraction prediction | FSW = 0.0451
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G37540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2898
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.1001
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G03530 | PredictedAffinity Capture-MS | FSW = 0.0546
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT1G04730 | PredictedCo-purification | FSW = 0.0213
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G29990 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0110
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G74310 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0604
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.0683
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT3G01090 | PredictedAffinity Capture-MS | FSW = 0.0311
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G03590 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1533
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT3G08650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0411
| Unknown | METAL TRANSPORTER FAMILY PROTEIN |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0875
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.0837
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G38630 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G02150 | PredictedAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.0545
| Unknown | BINDING |
AT5G10270 | PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G24410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0668
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT5G42190 | PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2767
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G48640 | PredictedAffinity Capture-Western | FSW = 0.0161
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G55190 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G60870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0524
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1841
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT4G36800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2646
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT5G02230 | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT5G06420 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3341
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G16750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1744
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G17000 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2086
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.2902
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT3G51890 | PredictedAffinity Capture-MSin vitro | FSW = 0.0075
| Unknown | PROTEIN BINDING / STRUCTURAL MOLECULE |
AT5G25530 | PredictedAffinity Capture-MS | FSW = 0.0579
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT2G32850 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0343
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G15790 | Predictedin vitro | FSW = 0.0187
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G27530 | Predictedtwo hybrid | FSW = 0.0093
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT3G07200 | Predictedtwo hybrid | FSW = 0.0078
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G12550 | Predictedtwo hybrid | FSW = 0.0062
| Unknown | OXIDOREDUCTASE FAMILY PROTEIN |
AT4G30890 | Predictedinteraction prediction | FSW = 0.0114
| Unknown | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G62600 | Predictedinteraction prediction | FSW = 0.0150
| Unknown | TRANSPORTIN-SR-RELATED |
AT1G03360 | Predictedinteraction prediction | FSW = 0.0091
| Unknown | ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) RNA BINDING / EXONUCLEASE |
AT1G51965 | PredictedGene fusion method | FSW = 0.0266
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT3G29340 | PredictedGene fusion method | FSW = 0.0464
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454