Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G53480 - ( importin beta-2 putative )

137 Proteins interacs with AT5G53480
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G05590

Predicted

Affinity Capture-MS

FSW = 0.0196

Class C:

plastid

RPL18 (RIBOSOMAL PROTEIN L18) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.0347

Class C:

plastid

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT3G47520

Predicted

Synthetic Lethality

FSW = 0.0199

Class C:

plastid

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT1G20620

Predicted

two hybrid

FSW = 0.0173

Class C:

plastid

CAT3 (CATALASE 3) CATALASE
AT3G07110

Predicted

Affinity Capture-MS

FSW = 0.0167

Class C:

plastid

60S RIBOSOMAL PROTEIN L13A (RPL13AA)
AT3G44310

Predicted

two hybrid

Affinity Capture-Western

fluorescence acceptor donor pair

fluorescence acceptor donor pair

FSW = 0.0057

Class C:

plastid

NIT1 INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT5G01410

Predicted

interologs mapping

FSW = 0.0250

Class C:

plastid

RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT3G63130

Predicted

Synthetic Lethality

FSW = 0.0469

Class C:

plastid

RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING
AT1G14850

Predicted

Synthetic Lethality

FSW = 0.0816

Class C:

plastid

NUP155 NUCLEOCYTOPLASMIC TRANSPORTER
AT1G07890

Predicted

Synthetic Lethality

FSW = 0.0159

Class C:

plastid

APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE
AT3G03780

Predicted

Affinity Capture-MS

FSW = 0.0232

Class C:

plastid

ATMS2 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE-HOMOCYSTEINE S-METHYLTRANSFERASE/ METHIONINE SYNTHASE
AT1G16030

Predicted

Affinity Capture-Western

FSW = 0.0231

Class C:

plastid

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT1G20630

Predicted

interaction prediction

FSW = 0.0318

Class C:

plastid

CAT1 (CATALASE 1) CATALASE
AT5G54770

Predicted

two hybrid

interaction prediction

FSW = 0.0146

Class C:

plastid

THI1 PROTEIN HOMODIMERIZATION
AT4G08870

Predicted

interaction prediction

two hybrid

FSW = 0.0398

Class C:

plastid

ARGINASE PUTATIVE
AT2G01350

Predicted

two hybrid

interaction prediction

FSW = 0.0219

Class C:

plastid

QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) NICOTINATE-NUCLEOTIDE DIPHOSPHORYLASE (CARBOXYLATING)
AT1G29900

Predicted

Affinity Capture-MS

FSW = 0.0266

Class C:

plastid

CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC
AT1G19660

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.0465

Class C:

plastid

WOUND-RESPONSIVE FAMILY PROTEIN
AT1G44318

Predicted

two hybrid

FSW = 0.0365

Class C:

plastid

HEMB2 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE
AT2G44050

Predicted

two hybrid

interaction prediction

FSW = 0.0088

Class C:

plastid

COS1 (COI1 SUPPRESSOR1) 67-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE
AT1G69740

Predicted

interaction prediction

FSW = 0.0259

Class C:

plastid

HEMB1 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE
AT5G06290

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.0175

Class C:

plastid

2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT4G35460

Predicted

interaction prediction

FSW = 0.0322

Class C:

plastid

NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B) THIOREDOXIN-DISULFIDE REDUCTASE
AT5G63400

Predicted

two hybrid

Synthetic Rescue

interologs mapping

interologs mapping

interologs mapping

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

Synthetic Rescue

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Reconstituted Complex

interologs mapping

Synthetic Rescue

Phenotypic Suppression

biochemical

FSW = 0.0250

Unknown

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT5G17920

Predicted

Affinity Capture-MS

FSW = 0.0213

Unknown

ATMS1 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE-HOMOCYSTEINE S-METHYLTRANSFERASE/ COPPER ION BINDING / METHIONINE SYNTHASE
AT3G12580

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.0154

Unknown

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT4G36130

Predicted

interologs mapping

FSW = 0.0381

Unknown

60S RIBOSOMAL PROTEIN L8 (RPL8C)
AT5G27850

Predicted

Affinity Capture-MS

FSW = 0.0436

Unknown

60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT4G16720

Predicted

Affinity Capture-MS

FSW = 0.0167

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15A)
AT1G55190

Predicted

interaction prediction

FSW = 0.0085

Unknown

PRA7
AT5G25780

Predicted

Affinity Capture-MS

FSW = 0.0070

Unknown

EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT5G24770

Predicted

Synthetic Lethality

FSW = 0.0128

Unknown

VSP2 (VEGETATIVE STORAGE PROTEIN 2) ACID PHOSPHATASE
AT5G20020

Predicted

in vitro

in vitro

Enriched domain pair

FSW = 0.0360

Unknown

RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT2G06510

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0018

Unknown

RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT4G11010

Predicted

two hybrid

FSW = 0.0237

Unknown

NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE
AT2G45710

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0370

Unknown

40S RIBOSOMAL PROTEIN S27 (RPS27A)
AT1G02500

Predicted

Affinity Capture-MS

FSW = 0.0213

Unknown

SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE
AT3G17390

Predicted

Affinity Capture-MS

FSW = 0.0152

Unknown

MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE
AT5G64740

Predicted

Synthetic Lethality

FSW = 0.0091

Unknown

CESA6 (CELLULOSE SYNTHASE 6) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G43670

Predicted

interaction prediction

two hybrid

FSW = 0.0205

Unknown

FRUCTOSE-16-BISPHOSPHATASE PUTATIVE / D-FRUCTOSE-16-BISPHOSPHATE 1-PHOSPHOHYDROLASE PUTATIVE / FBPASE PUTATIVE
AT1G55690

Predicted

Synthetic Lethality

FSW = 0.0080

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT4G26110

Predicted

interaction prediction

FSW = 0.0228

Unknown

NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT5G47100

Predicted

interologs mapping

interologs mapping

interologs mapping

Synthetic Lethality

FSW = 0.0143

Unknown

CBL9 CALCIUM ION BINDING
AT1G13120

Predicted

Reconstituted Complex

FSW = 0.0797

Unknown

EMB1745 (EMBRYO DEFECTIVE 1745)
AT3G25540

Predicted

two hybrid

two hybrid

two hybrid

interologs mapping

FSW = 0.0155

Unknown

LAG1
AT1G64230

Predicted

interologs mapping

FSW = 0.0278

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT2G19480

Predicted

two hybrid

FSW = 0.0146

Unknown

NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT2G17420

Predicted

two hybrid

FSW = 0.0141

Unknown

NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) THIOREDOXIN-DISULFIDE REDUCTASE
AT2G25880

Predicted

Affinity Capture-MS

FSW = 0.0155

Unknown

ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE
AT2G31660Predicted

in vitro

in vitro

FSW = 0.0179

Unknown

SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER
AT2G45490

Predicted

Affinity Capture-MS

FSW = 0.0132

Unknown

ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE
AT5G57015

Predicted

in vitro

FSW = 0.0070

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G27310

Predicted

interaction prediction

FSW = 0.0400

Unknown

NTF2A (NUCLEAR TRANSPORT FACTOR 2A) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT4G16830

Predicted

interologs mapping

FSW = 0.0089

Unknown

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT4G34430

Predicted

Synthetic Lethality

FSW = 0.0088

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT4G24880

Predicted

in vivo

in vitro

FSW = 0.0232

Unknown

UNKNOWN PROTEIN
AT1G24310

Predicted

Affinity Capture-Western

Affinity Capture-MS

interaction prediction

FSW = 0.0432

Unknown

UNKNOWN PROTEIN
AT5G35910

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0288

Unknown

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.0149

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT3G05060

Predicted

Affinity Capture-MS

FSW = 0.0164

Unknown

SAR DNA-BINDING PROTEIN PUTATIVE
AT5G58590

Predicted

in vitro

in vitro

in vivo

FSW = 0.0225

Unknown

RANBP1 (RAN BINDING PROTEIN 1) PROTEIN BINDING
AT3G06720

Predicted

Reconstituted Complex

Reconstituted Complex

Affinity Capture-MS

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Reconstituted Complex

Co-purification

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.2659

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT2G36170Predicted

Affinity Capture-MS

FSW = 0.0070

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT2G47620

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0130

Unknown

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT3G12860

Predicted

Affinity Capture-MS

FSW = 0.0122

Unknown

NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT1G56110

Predicted

Affinity Capture-MS

FSW = 0.0104

Unknown

NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56)
AT4G23570

Predicted

Affinity Capture-MS

FSW = 0.0150

Unknown

SGT1A PROTEIN BINDING
AT5G18620

Predicted

Affinity Capture-MS

FSW = 0.0172

Unknown

CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT3G06400

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0196

Unknown

CHR11 (CHROMATIN-REMODELING PROTEIN 11) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT5G44200

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0260

Unknown

CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING
AT1G05055

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0244

Unknown

GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G65470

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0073

Unknown

FAS1 (FASCIATA 1) HISTONE BINDING
AT2G37470

Predicted

Affinity Capture-Western

FSW = 0.0139

Unknown

HISTONE H2B PUTATIVE
AT3G61530

Predicted

interaction prediction

two hybrid

FSW = 0.0318

Unknown

PANB2 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
AT4G23900

Predicted

two hybrid

interaction prediction

FSW = 0.0233

Unknown

NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4)
AT2G47510

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0464

Unknown

FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT2G46110

Predicted

two hybrid

FSW = 0.0282

Unknown

KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1) 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
AT3G18480

Predicted

Synthetic Lethality

FSW = 0.0057

Unknown

ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT)
AT1G04260

Predicted

two hybrid

FSW = 0.0102

Unknown

MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING
AT2G14610

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0399

Unknown

PR1 (PATHOGENESIS-RELATED GENE 1)
AT1G52300

Predicted

Synthetic Rescue

FSW = 0.0282

Unknown

60S RIBOSOMAL PROTEIN L37 (RPL37B)
AT5G10330Predicted

Synthetic Lethality

FSW = 0.0115

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT2G18230

Predicted

Synthetic Lethality

FSW = 0.0199

Unknown

ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT5G14800

Predicted

two hybrid

interaction prediction

FSW = 0.0516

Unknown

P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE
AT2G29540

Predicted

Synthetic Lethality

FSW = 0.0097

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G19560

Predicted

two hybrid

two hybrid

FSW = 0.0111

Unknown

EER5 (ENHANCED ETHYLENE RESPONSE 5)
AT5G13750

Predicted

two hybrid

FSW = 0.0284

Unknown

ZIFL1 (ZINC INDUCED FACILITATOR-LIKE 1) TETRACYCLINEHYDROGEN ANTIPORTER
AT1G09270

Predicted

in vitro

FSW = 0.0232

Unknown

IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT1G10390

Predicted

in vitro

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0689

Unknown

NUCLEOPORIN FAMILY PROTEIN
AT3G15970

Predicted

in vitro

in vivo

FSW = 0.0483

Unknown

RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN
AT3G23090

Predicted

in vitro

FSW = 0.0410

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN INFLORESCENCE MERISTEM LEAF APEX HYPOCOTYL FLOWER ROOT EXPRESSED DURING PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S TARGETING FOR XKLP2 (INTERPROIPR009675) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS WDL1 (TAIRAT3G046303) HAS 483 BLAST HITS TO 450 PROTEINS IN 87 SPECIES ARCHAE - 2 BACTERIA - 15 METAZOA - 188 FUNGI - 17 PLANTS - 148 VIRUSES - 0 OTHER EUKARYOTES - 113 (SOURCE NCBI BLINK)
AT3G59020

Predicted

in vitro

in vitro

FSW = 0.0375

Unknown

BINDING / PROTEIN TRANSPORTER
AT4G11790

Predicted

in vivo

in vitro

FSW = 0.0410

Unknown

RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN
AT5G49310

Predicted

in vitro

in vitro

FSW = 0.0331

Unknown

IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER
AT2G45000

Predicted

in vitro

FSW = 0.0119

Unknown

EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE
AT5G55190

Predicted

in vitro

in vitro

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.0748

Unknown

RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G16360

Predicted

Phenotypic Enhancement

interologs mapping

FSW = 0.0155

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT1G57660Predicted

two hybrid

FSW = 0.0051

Unknown

60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT1G59660Predicted

interaction prediction

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-MS

FSW = 0.0845

Unknown

NUCLEOPORIN FAMILY PROTEIN
AT2G27920

Predicted

interologs mapping

Synthetic Lethality

Reconstituted Complex

interologs mapping

FSW = 0.0303

Unknown

SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE
AT2G32220

Predicted

interologs mapping

FSW = 0.0538

Unknown

60S RIBOSOMAL PROTEIN L27 (RPL27A)
AT3G06910

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0422

Unknown

ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE
AT3G08700

Predicted

Synthetic Lethality

FSW = 0.0075

Unknown

UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT3G24830

Predicted

Affinity Capture-MS

FSW = 0.0239

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G51880

Predicted

Synthetic Lethality

FSW = 0.0188

Unknown

HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT4G01560

Predicted

Reconstituted Complex

FSW = 0.0123

Unknown

MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G27640

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0452

Unknown

IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT4G33200

Predicted

interologs mapping

FSW = 0.0137

Unknown

XI-I MOTOR/ PROTEIN BINDING
AT4G35620

Predicted

Reconstituted Complex

FSW = 0.0270

Unknown

CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G19820

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0265

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G38890

Predicted

Synthetic Lethality

FSW = 0.0273

Unknown

EXORIBONUCLEASE-RELATED
AT5G49970

Predicted

Synthetic Lethality

FSW = 0.0087

Unknown

ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT1G10580

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0052

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G15780

Predicted

Affinity Capture-MS

FSW = 0.0098

Unknown

UNKNOWN PROTEIN
AT1G21710

Predicted

Affinity Capture-MS

FSW = 0.0250

Unknown

OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) OXIDIZED PURINE BASE LESION DNA N-GLYCOSYLASE
AT1G24706

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0150

Unknown

UNKNOWN PROTEIN
AT1G34580

Predicted

Reconstituted Complex

FSW = 0.0151

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G54390

Predicted

Affinity Capture-MS

FSW = 0.0306

Unknown

PHD FINGER PROTEIN-RELATED
AT1G66510

Predicted

Affinity Capture-MS

FSW = 0.0060

Unknown

AAR2 PROTEIN FAMILY
AT2G31260

Predicted

biochemical

FSW = 0.0144

Unknown

APG9 (AUTOPHAGY 9)
AT3G54380

Predicted

Affinity Capture-MS

FSW = 0.0362

Unknown

SAC3/GANP FAMILY PROTEIN
AT5G12410

Predicted

Affinity Capture-MS

FSW = 0.0313

Unknown

THUMP DOMAIN-CONTAINING PROTEIN
AT5G14520

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0243

Unknown

PESCADILLO-RELATED
AT5G40530

Predicted

Affinity Capture-MS

FSW = 0.0313

Unknown

EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK)
AT5G65180

Predicted

Affinity Capture-MS

FSW = 0.0192

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT5G67320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0061

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT1G54440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0184

Unknown

3-5 EXONUCLEASE/ NUCLEIC ACID BINDING
AT1G02690

Predicted

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Reconstituted Complex

two hybrid

Enriched domain pair

Co-expression

FSW = 0.2290

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT4G11260

Predicted

Affinity Capture-MS

FSW = 0.0215

Unknown

SGT1B PROTEIN BINDING
AT3G26990

Predicted

Affinity Capture-MS

FSW = 0.0122

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK)
AT3G06000

Predicted

Synthetic Lethality

FSW = 0.0333

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT3G43790

Predicted

two hybrid

FSW = 0.0365

Unknown

ZIFL2 (ZINC INDUCED FACILITATOR-LIKE 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT2G39770

Predicted

two hybrid

interaction prediction

FSW = 0.0268

Unknown

CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT3G16190

Predicted

two hybrid

interaction prediction

FSW = 0.0501

Unknown

ISOCHORISMATASE HYDROLASE FAMILY PROTEIN
AT3G07270

Predicted

interaction prediction

two hybrid

FSW = 0.0225

Unknown

GTP CYCLOHYDROLASE I
AT5G55810

Predicted

two hybrid

interaction prediction

FSW = 0.0266

Unknown

ATNMNAT (A THALIANA NICOTINATE/NICOTINAMIDE MONONUCLEOTIDE ADENYLTRANSFERASE) NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE/ NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE
AT1G60680

Predicted

interaction prediction

FSW = 0.0265

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454