Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G66510 - ( AAR2 protein family )

16 Proteins interacs with AT1G66510
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G07590

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2207

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT4G02840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2090

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT2G01690

Predicted

two hybrid

FSW = 0.0134

Unknown

BINDING
AT1G20960

Predicted

Affinity Capture-MS

FSW = 0.1684

Unknown

EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G16150

Predicted

Affinity Capture-MS

two hybrid

Affinity Capture-MS

FSW = 0.0383

Unknown

PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G80070

Predicted

co-fractionation

Co-fractionation

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Co-fractionation

Affinity Capture-Western

Colocalization

interaction prediction

FSW = 0.1481

Unknown

SUS2 (ABNORMAL SUSPENSOR 2)
AT5G53480

Predicted

Affinity Capture-MS

FSW = 0.0060

Unknown

IMPORTIN BETA-2 PUTATIVE
AT2G47640

Predicted

Affinity Capture-MS

FSW = 0.1323

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT2G41500

Predicted

Affinity Capture-MS

FSW = 0.1899

Unknown

EMB2776 NUCLEOTIDE BINDING
AT4G30220

Predicted

Affinity Capture-MS

FSW = 0.1860

Unknown

RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT5G08180

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0439

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT2G44950

Predicted

two hybrid

FSW = 0.0067

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT5G08320

Predicted

two hybrid

FSW = 0.0368

Unknown

UNKNOWN PROTEIN
AT3G59410

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0563

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G32850

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

FSW = 0.0400

Unknown

NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING
AT4G03430

Predicted

Affinity Capture-MS

FSW = 0.1311

Unknown

EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454