Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G41500 - ( EMB2776 nucleotide binding )
67 Proteins interacs with AT2G41500| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G02840
   | PredictedAffinity Capture-MS | FSW = 0.4514
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT1G20960
| PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4372
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G09760
| PredictedAffinity Capture-MS | FSW = 0.3232
| Class C:nucleus | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
| AT3G03920
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0304
| Class C:nucleus | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
| AT5G64270
| PredictedAffinity Capture-MS | FSW = 0.2639
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
| AT5G08290
| PredictedAffinity Capture-MS | FSW = 0.5419
| Class C:nucleus | YLS8 CATALYTIC |
| AT2G47640
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3472
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT4G25630
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0625
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT5G37720
| PredictedAffinity Capture-MS | FSW = 0.0351
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT2G43810
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1743
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT1G19120
| PredictedAffinity Capture-MS | FSW = 0.1304
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G03870
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2100
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT4G30220
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3798
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
| AT2G23930
| PredictedAffinity Capture-MS | FSW = 0.3840
| Class C:nucleus | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
| AT5G08180
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0581
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
| AT5G27720
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2401
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
| AT3G13940
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0072
| Class C:nucleus | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT3G11500
| Predictedinteraction predictionCo-expression | FSW = 0.3531
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
| AT1G02840
| Predictedin vitroAffinity Capture-MSCo-expression | FSW = 0.0130
| Class C:nucleus | SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G28060
| Predictedinteraction predictiontwo hybridtwo hybridReconstituted Complexinterologs mappingAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingCo-expression | FSW = 0.4363
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
| AT1G20580
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4655
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT3G05060
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0557
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT3G12860
| PredictedAffinity Capture-MS | FSW = 0.0401
| Class C:nucleus | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
| AT1G56110
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0379
| Class C:nucleus | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
| AT1G04510
| PredictedAffinity Capture-WesternCo-purificationCo-expression | FSW = 0.2797
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G05410
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0523
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G66540
| PredictedAffinity Capture-MS | FSW = 0.0373
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
| AT1G03330
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3278
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
| AT1G76860
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2791
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT4G30330
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3896
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT1G21190
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2371
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G18740
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3349
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT4G22380
| PredictedAffinity Capture-MS | FSW = 0.1166
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
| AT5G48870
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2597
| Class C:nucleus | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
| AT3G12580
| PredictedAffinity Capture-Western | FSW = 0.0139
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
| AT3G66658
| PredictedGene fusion method | FSW = 0.0370
| Unknown | ALDH22A1 (ALDEHYDE DEHYDROGENASE 22A1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
| AT1G80070
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3806
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT2G33340
| PredictedAffinity Capture-WesternCo-purification | FSW = 0.3050
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G38730
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0143
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE / CYCLOPHILIN PUTATIVE / ROTAMASE PUTATIVE |
| AT1G62740
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0240
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
| AT4G24270
| Predictedfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0304
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G12650
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0296
| Unknown | UNKNOWN PROTEIN |
| AT1G60170
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5738
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
| AT1G14640
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3309
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
| AT1G66510
| PredictedAffinity Capture-MS | FSW = 0.1899
| Unknown | AAR2 PROTEIN FAMILY |
| AT2G32600
| PredictedAffinity Capture-MS | FSW = 0.2156
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
| AT3G05760
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2236
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT3G55220
| PredictedAffinity Capture-MS | FSW = 0.3446
| Unknown | SPLICING FACTOR PUTATIVE |
| AT3G59410
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0347
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT4G00660
| PredictedAffinity Capture-MS | FSW = 0.1004
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT4G03430
| PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3865
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT4G21660
| PredictedAffinity Capture-MS | FSW = 0.3446
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
| AT5G06160
| PredictedAffinity Capture-MS | FSW = 0.3333
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT5G46400
| PredictedAffinity Capture-MS | FSW = 0.3400
| Unknown | PRP39-2 |
| AT2G43650
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0403
| Unknown | EMB2777 (EMBRYO DEFECTIVE 2777) |
| AT3G27000
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0046
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT4G32720
| PredictedAffinity Capture-MS | FSW = 0.0653
| Unknown | ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING |
| AT3G53570
| PredictedAffinity Capture-MSin vitro | FSW = 0.0230
| Unknown | AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G79880
| PredictedAffinity Capture-MS | FSW = 0.0748
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
| AT4G12600
| PredictedAffinity Capture-MS | FSW = 0.1275
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
| AT1G12270
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0149
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
| AT5G46190
| Predictedtwo hybridCo-expression | FSW = 0.0051
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
| AT1G03050
| Predictedtwo hybrid | FSW = 0.0254
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
| AT5G57200
| Predictedinteraction prediction | FSW = 0.0148
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
| AT4G21940
| PredictedGene fusion method | FSW = 0.0176
| Unknown | CPK15 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G01600
| PredictedGene fusion method | FSW = 0.0139
| Unknown | CYP86A4 FATTY ACID (OMEGA-1)-HYDROXYLASE/ OXYGEN BINDING |
| AT4G30000
| PredictedGene fusion method | FSW = 0.0254
| Unknown | DIHYDROPTERIN PYROPHOSPHOKINASE PUTATIVE / DIHYDROPTEROATE SYNTHASE PUTATIVE / DHPS PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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