Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G21190 - ( small nuclear ribonucleoprotein putative / snRNP putative / Sm protein putative )
50 Proteins interacs with AT1G21190| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G27090
   | PredictedAffinity Capture-Western | FSW = 0.1301
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
| AT1G76040
| PredictedAffinity Capture-Western | FSW = 0.0167
| Class C:nucleus | CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT1G20960
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2127
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G20550
| Predictedco-fractionationCo-fractionation | FSW = 0.0218
| Class C:nucleus | DDL (DAWDLE) |
| AT2G42590
| Predictedtwo hybrid | FSW = 0.0218
| Class C:nucleus | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT2G43810
| Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.2006
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT5G27720
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vitroAffinity Capture-Western | FSW = 0.1701
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
| AT1G76300
| Predictedtwo hybrid | FSW = 0.0789
| Class C:nucleus | SMD3 (SNRNP CORE PROTEIN SMD3) |
| AT1G77950
| Predictedco-fractionationCo-fractionation | FSW = 0.0448
| Class C:nucleus | AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR |
| AT4G30330
| PredictedAffinity Capture-MStwo hybrid | FSW = 0.2547
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT1G03330
| Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3141
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
| AT2G18740
| Predictedtwo hybrid | FSW = 0.2641
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT1G76860
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5120
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G47640
| PredictedPhylogenetic profile method | FSW = 0.1847
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT1G28060
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2471
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
| AT3G12810
| PredictedAffinity Capture-MS | FSW = 0.0144
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT3G14080
| Predictedin vitroAffinity Capture-MS | FSW = 0.1205
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT3G59810
| PredictedAffinity Capture-MSin vitro | FSW = 0.3265
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT1G19120
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.1612
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G03870
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridPhylogenetic profile methodCo-expression | FSW = 0.2134
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT4G30220
| PredictedAffinity Capture-RNA | FSW = 0.2679
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
| AT1G04510
| PredictedCo-purification | FSW = 0.1518
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G48870
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vitrotwo hybridCo-expression | FSW = 0.2990
| Class C:nucleus | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
| AT1G65700
| Predictedin vitro | FSW = 0.1256
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G41500
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2371
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
| AT4G39160
| PredictedCo-purificationCo-purificationCo-purificationtwo hybridinterologs mapping | FSW = 0.0886
| Class C:nucleus | DNA BINDING / TRANSCRIPTION FACTOR |
| AT4G36750
| Predictedtwo hybrid | FSW = 0.0468
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
| AT3G30390
| PredictedSynthetic Rescue | FSW = 0.0431
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
| AT5G16630
| Predictedtwo hybrid | FSW = 0.0325
| Unknown | RAD4 DAMAGED DNA BINDING |
| AT1G80070
| PredictedAffinity Capture-MS | FSW = 0.2049
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT5G26340
| Predictedtwo hybrid | FSW = 0.0682
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
| AT1G69850
| Predictedtwo hybrid | FSW = 0.0939
| Unknown | ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER |
| AT1G10060
| Predictedtwo hybrid | FSW = 0.0351
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
| AT2G14610
| Predictedinterologs mapping | FSW = 0.0291
| Unknown | PR1 (PATHOGENESIS-RELATED GENE 1) |
| AT1G04200
| Predictedtwo hybrid | FSW = 0.0216
| Unknown | UNKNOWN PROTEIN |
| AT1G02970
| PredictedPhenotypic Suppression | FSW = 0.0137
| Unknown | WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) KINASE/ PROTEIN KINASE |
| AT1G07880
| Predictedtwo hybrid | FSW = 0.0528
| Unknown | ATMPK13 MAP KINASE/ KINASE |
| AT2G27170
| Predictedinterologs mappinginterologs mappingAffinity Capture-Westernco-fractionationCo-fractionationinterologs mappingCo-purification | FSW = 0.0761
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
| AT2G46070
| PredictedAffinity Capture-Western | FSW = 0.0628
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
| AT4G19880
| Predictedinterologs mapping | FSW = 0.0157
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
| AT2G14880
| PredictedSynthetic Rescueinterologs mappingSynthetic Rescue | FSW = 0.0248
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
| AT2G40460
| Predictedtwo hybrid | FSW = 0.0222
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
| AT3G19450
| Predictedtwo hybrid | FSW = 0.1148
| Unknown | ATCAD4 CINNAMYL-ALCOHOL DEHYDROGENASE |
| AT5G25520
| Predictedtwo hybrid | FSW = 0.0972
| Unknown | TRANSCRIPTION ELONGATION FACTOR-RELATED |
| AT5G57190
| Predictedtwo hybrid | FSW = 0.0868
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
| AT5G13570
| PredictedAffinity Capture-MS | FSW = 0.0602
| Unknown | DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION |
| AT4G03430
| PredictedAffinity Capture-MS | FSW = 0.1976
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT1G60170
| PredictedAffinity Capture-MS | FSW = 0.2981
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
| AT1G43330
| Predictedtwo hybrid | FSW = 0.0177
| Unknown | MYB FAMILY PROTEIN-RELATED |
| AT1G03560
| Predictedtwo hybrid | FSW = 0.0201
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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