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AT3G12810 - ( PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP binding / DNA binding / helicase/ nucleic acid binding )

118 Proteins interacs with AT3G12810

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G38810	Experimental	FSW = 0.1599	Class A: nucleus Class D: plastid (p = 0.78) nucleus (p = 0.78)	HTA8 (HISTONE H2A 8) DNA BINDING
AT3G33520	Experimental pull down Reconstituted Complex coimmunoprecipitation in vitro	FSW = 0.0384	Class A: nucleus Class D: nucleus (p = 0.78) cytosol (p = 0.67)	ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G37055	Experimental pull down Reconstituted Complex coimmunoprecipitation in vitro	FSW = 0.0524	Unknown	SEF (SERRATED LEAVES AND EARLY FLOWERING)
AT1G52740	Experimental	FSW = 0.5717	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT3G54560	Experimental	FSW = 0.0823	Unknown	HTA11 DNA BINDING
AT5G67630	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.0985	Class C: nucleus	DNA HELICASE PUTATIVE
AT5G22330	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Reconstituted Complex	FSW = 0.1261	Class C: nucleus	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING
AT5G67270	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2945	Class C: nucleus	ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT1G17790	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0966	Class C: nucleus	DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN
AT3G52250	Predicted Co-purification	FSW = 0.0045	Class C: nucleus	DNA BINDING / TRANSCRIPTION FACTOR
AT5G35910	Predicted Phenotypic Enhancement	FSW = 0.2011	Class C: nucleus	3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT1G02680	Predicted Phenotypic Enhancement	FSW = 0.1340	Class C: nucleus	TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G43810	Predicted Phenotypic Enhancement	FSW = 0.2684	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT2G03870	Predicted Phenotypic Enhancement	FSW = 0.1897	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G13940	Predicted Phenotypic Enhancement	FSW = 0.0914	Class C: nucleus	DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G18450	Predicted Affinity Capture-MS	FSW = 0.0684	Class C: nucleus	ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G02740	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.3412	Class C: nucleus	CHROMATIN BINDING
AT2G35670	Predicted Phenotypic Suppression	FSW = 0.1660	Class C: nucleus	FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR
AT2G47620	Predicted Phenotypic Enhancement	FSW = 0.0746	Class C: nucleus	ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT5G19310	Predicted Phenotypic Suppression Phenotypic Suppression	FSW = 0.0934	Class C: nucleus	HOMEOTIC GENE REGULATOR PUTATIVE
AT1G03190	Predicted Phenotypic Enhancement	FSW = 0.1598	Class C: nucleus	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT1G07370	Predicted Phenotypic Enhancement	FSW = 0.1964	Class C: nucleus	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT2G36740	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Phenotypic Suppression	FSW = 0.6025	Class C: nucleus	SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G47210	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1371	Class C: nucleus	MYB FAMILY TRANSCRIPTION FACTOR
AT1G05055	Predicted Phenotypic Enhancement	FSW = 0.0575	Class C: nucleus	GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G15430	Predicted Phenotypic Enhancement	FSW = 0.1135	Class C: nucleus	NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G38560	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.3271	Class C: nucleus	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT3G20010	Predicted Phenotypic Enhancement	FSW = 0.0866	Class C: nucleus	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT1G06230	Predicted Affinity Capture-MS	FSW = 0.0703	Class C: nucleus	GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING
AT1G76860	Predicted Affinity Capture-MS	FSW = 0.0197	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G21190	Predicted Affinity Capture-MS	FSW = 0.0144	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G49240	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.0505	Unknown	ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G44610	Predicted interaction prediction	FSW = 0.0232	Unknown	RAB6A GTP BINDING / PROTEIN BINDING
AT5G19740	Predicted Phenotypic Enhancement	FSW = 0.1516	Unknown	PEPTIDASE M28 FAMILY PROTEIN
AT1G64790	Predicted Phenotypic Enhancement	FSW = 0.1426	Unknown	BINDING
AT1G36050	Predicted two hybrid two hybrid	FSW = 0.0295	Unknown	UNKNOWN PROTEIN
AT5G09650	Predicted two hybrid two hybrid	FSW = 0.0076	Unknown	ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G73820	Predicted Phenotypic Enhancement	FSW = 0.0898	Unknown	SSU72-LIKE FAMILY PROTEIN
AT2G28190	Predicted Phenotypic Enhancement	FSW = 0.1354	Unknown	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT5G63110	Predicted Phenotypic Enhancement	FSW = 0.1857	Unknown	HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT3G49830	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0436	Unknown	DNA HELICASE-RELATED
AT3G12110	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1046	Unknown	ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G23630	Predicted Phenotypic Suppression	FSW = 0.1135	Unknown	ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G11890	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2866	Unknown	SEC22 TRANSPORTER
AT2G44950	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement synthetic growth defect	FSW = 0.3131	Unknown	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT2G22290	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0341	Unknown	ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G75510	Predicted Phenotypic Enhancement	FSW = 0.1661	Unknown	TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT1G22200	Predicted two hybrid	FSW = 0.0278	Unknown	UNKNOWN PROTEIN
AT3G47690	Predicted synthetic growth defect	FSW = 0.2228	Unknown	ATEB1A MICROTUBULE BINDING
AT5G41150	Predicted interaction prediction	FSW = 0.0423	Unknown	UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT2G23380	Predicted Phenotypic Enhancement	FSW = 0.0443	Unknown	CLF (CURLY LEAF) TRANSCRIPTION FACTOR
AT3G25980	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.1027	Unknown	MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT5G19910	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2811	Unknown	SOH1 FAMILY PROTEIN
AT2G42120	Predicted Phenotypic Enhancement	FSW = 0.0265	Unknown	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT4G02020	Predicted Phenotypic Enhancement	FSW = 0.0444	Unknown	SWN (SWINGER) TRANSCRIPTION FACTOR
AT2G36200	Predicted synthetic growth defect	FSW = 0.1432	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT3G61740	Predicted Phenotypic Suppression	FSW = 0.0236	Unknown	SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G42400	Predicted Phenotypic Suppression	FSW = 0.0323	Unknown	SDG25 (SET DOMAIN PROTEIN 25)
AT5G46250	Predicted Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.0781	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G36080	Predicted Affinity Capture-Western Affinity Capture-MS	FSW = 0.0977	Unknown	FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN
AT5G09740	Predicted Affinity Capture-Western synthetic growth defect	FSW = 0.2721	Unknown	HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT1G51310	Predicted Phenotypic Enhancement	FSW = 0.1203	Unknown	TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
AT1G61040	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2228	Unknown	VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT2G02760	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect	FSW = 0.2027	Unknown	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT1G04950	Predicted Phenotypic Enhancement	FSW = 0.0829	Unknown	TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G05910	Predicted Phenotypic Enhancement	FSW = 0.1543	Unknown	CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G08780	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.2504	Unknown	AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G29990	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1975	Unknown	PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G32130	Predicted Phenotypic Enhancement	FSW = 0.1167	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G34150	Predicted Phenotypic Enhancement	FSW = 0.1800	Unknown	TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G50490	Predicted Phenotypic Enhancement	FSW = 0.0448	Unknown	UBC20 (UBIQUITIN-CONJUGATING ENZYME 20) UBIQUITIN-PROTEIN LIGASE
AT1G51710	Predicted Phenotypic Enhancement	FSW = 0.2200	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G54140	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1898	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G59890	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.3182	Unknown	SNL5 (SIN3-LIKE 5)
AT1G63160	Predicted Phenotypic Enhancement	FSW = 0.0867	Unknown	REPLICATION FACTOR C 40 KDA PUTATIVE
AT1G66740	Predicted synthetic growth defect	FSW = 0.2094	Unknown	SGA2
AT1G67190	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.1389	Unknown	F-BOX FAMILY PROTEIN
AT1G80410	Predicted synthetic growth defect	FSW = 0.1698	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G44150	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.3247	Unknown	ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G04710	Predicted Synthetic Lethality	FSW = 0.0685	Unknown	ANKYRIN REPEAT FAMILY PROTEIN
AT3G18520	Predicted Phenotypic Enhancement	FSW = 0.1474	Unknown	HDA15 HISTONE DEACETYLASE
AT3G18860	Predicted Phenotypic Enhancement	FSW = 0.2354	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G21060	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2489	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22142	Predicted Phenotypic Suppression	FSW = 0.2066	Unknown	STRUCTURAL CONSTITUENT OF CELL WALL
AT3G22480	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.2081	Unknown	PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G22590	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.3045	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G24030	Predicted Phenotypic Enhancement	FSW = 0.0741	Unknown	HYDROXYETHYLTHIAZOLE KINASE FAMILY PROTEIN
AT3G42660	Predicted synthetic growth defect	FSW = 0.2862	Unknown	NUCLEOTIDE BINDING
AT3G47120	Predicted Phenotypic Enhancement	FSW = 0.0492	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G54380	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2361	Unknown	SAC3/GANP FAMILY PROTEIN
AT3G58560	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.1605	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G22140	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1644	Unknown	DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G34570	Predicted Synthetic Lethality	FSW = 0.0308	Unknown	THY-2 (THYMIDYLATE SYNTHASE 2) DIHYDROFOLATE REDUCTASE/ THYMIDYLATE SYNTHASE
AT5G10260	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2381	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10960	Predicted synthetic growth defect	FSW = 0.1125	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13780	Predicted synthetic growth defect	FSW = 0.2311	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G23290	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1799	Unknown	PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G26680	Predicted synthetic growth defect	FSW = 0.1812	Unknown	ENDONUCLEASE PUTATIVE
AT5G41880	Predicted Phenotypic Enhancement	FSW = 0.1299	Unknown	POLA3 DNA PRIMASE
AT5G45600	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Phenotypic Suppression	FSW = 0.4811	Unknown	GAS41 PROTEIN BINDING
AT5G48120	Predicted Phenotypic Enhancement	FSW = 0.1448	Unknown	BINDING
AT5G49510	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.2127	Unknown	PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G53770	Predicted Synthetic Lethality	FSW = 0.0884	Unknown	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G61150	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2652	Unknown	VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G61770	Predicted Phenotypic Enhancement	FSW = 0.0414	Unknown	PPAN (PETER PAN-LIKE PROTEIN)
AT5G63670	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1543	Unknown	SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT5G67320	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2177	Unknown	HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT4G04210	Predicted Phenotypic Enhancement	FSW = 0.1355	Unknown	PUX4 PROTEIN BINDING
AT5G65180	Predicted Phenotypic Enhancement	FSW = 0.2160	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT2G18000	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.4066	Unknown	TAF14 (TBP-ASSOCIATED FACTOR 14)
AT1G55255	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect Synthetic Lethality	FSW = 0.1125	Unknown	TAF14 (TBP-ASSOCIATED FACTOR 14)
AT1G15920	Predicted synthetic growth defect	FSW = 0.0960	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G14400	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect Synthetic Lethality	FSW = 0.1130	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT5G08565	Predicted Synthetic Lethality	FSW = 0.0689	Unknown	POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT4G30890	Predicted Synthetic Lethality	FSW = 0.0576	Unknown	UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT3G49660	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1279	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G16370	Predicted Synthetic Lethality	FSW = 0.0295	Unknown	THY-1 (THYMIDYLATE SYNTHASE 1) DIHYDROFOLATE REDUCTASE/ THYMIDYLATE SYNTHASE
AT1G10450	Predicted Synthetic Lethality	FSW = 0.1292	Unknown	SNL6 (SIN3-LIKE 6)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT3G12810 - ( PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP binding / DNA binding / helicase/ nucleic acid binding )

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