Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G37055 - ( SEF (SERRATED LEAVES AND EARLY FLOWERING) )
15 Proteins interacs with AT5G37055Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G12810 | Experimentalpull downReconstituted Complexcoimmunoprecipitationin vitro | FSW = 0.0524
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G33520 | Experimentalin vitrotwo hybridReconstituted Complextwo hybridpull downReconstituted Complexcoimmunoprecipitationin vitro | FSW = 0.1642
| Unknown | ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G36740 | Experimentalcoimmunoprecipitation | FSW = 0.0567
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT4G09820 | Experimental | FSW = 0.0593
| Unknown | TT8 (TRANSPARENT TESTA 8) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G54560 | Experimental | FSW = 0.2208
| Unknown | HTA11 DNA BINDING |
AT1G52740 | Experimental | FSW = 0.0317
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G27310 | Predictedtwo hybrid | FSW = 0.0861
| Unknown | NTF2A (NUCLEAR TRANSPORT FACTOR 2A) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT4G17020 | Predictedtwo hybridtwo hybrid | FSW = 0.0287
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT1G11570 | Predictedtwo hybrid | FSW = 0.1579
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) PUTATIVE |
AT5G47630 | Predictedtwo hybrid | FSW = 0.0182
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT1G65290 | Predictedtwo hybrid | FSW = 0.0611
| Unknown | MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING |
AT2G44620 | Predictedtwo hybrid | FSW = 0.1778
| Unknown | MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1) ACYL CARRIER/ COFACTOR BINDING / PHOSPHOPANTETHEINE BINDING |
AT1G34370 | Predictedtwo hybrid | FSW = 0.0278
| Unknown | STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G27530 | Predictedtwo hybridtwo hybrid | FSW = 0.0120
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT3G57980 | Predictedtwo hybrid | FSW = 0.1778
| Unknown | DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454