Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G47630 - ( mtACP3 (mitochondrial acyl carrier protein 3) acyl carrier/ cofactor binding )
100 Proteins interacs with AT5G47630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G13450 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0718
| Class C:mitochondrion | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT1G20630 | PredictedAffinity Capture-MS | FSW = 0.0173
| Class C:mitochondrion | CAT1 (CATALASE 1) CATALASE |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0675
| Class C:mitochondrion | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT1G65290 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0286
| Class C:mitochondrion | MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING |
AT2G33120 | PredictedAffinity Capture-MS | FSW = 0.0119
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT5G12140 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2365
| Unknown | ATCYS1 (A THALIANA CYSTATIN-1) CYSTEINE-TYPE ENDOPEPTIDASE INHIBITOR |
AT2G34480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0818
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT4G01320 | PredictedAffinity Capture-MS | FSW = 0.1006
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0317
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G45960 | PredictedAffinity Capture-MSinterologs mapping | FSW = 0.0163
| Unknown | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT5G09660 | PredictedPhenotypic Enhancement | FSW = 0.0831
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G44610 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-purification | FSW = 0.0852
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G06290 | PredictedSynthetic Rescue | FSW = 0.0420
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT2G30390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1563
| Unknown | FC2 (FERROCHELATASE 2) FERROCHELATASE |
AT1G02780 | PredictedReconstituted Complex | FSW = 0.0152
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G58640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-Western | FSW = 0.1625
| Unknown | SELENOPROTEIN-RELATED |
AT4G36490 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1990
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT3G55810 | PredictedAffinity Capture-MS | FSW = 0.0240
| Unknown | PYRUVATE KINASE PUTATIVE |
AT1G75170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.1973
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G35020 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0962
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT2G32670 | PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.1558
| Unknown | ATVAMP725 |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT4G14350 | PredictedPhenotypic Enhancement | FSW = 0.0317
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G33090 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1246
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT1G77210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1878
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G18800 | PredictedSynthetic RescueSynthetic RescuePhenotypic Enhancement | FSW = 0.1064
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT2G41790 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | PEPTIDASE M16 FAMILY PROTEIN / INSULINASE FAMILY PROTEIN |
AT3G60180 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0578
| Unknown | URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE |
AT4G28860 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1574
| Unknown | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G44860 | PredictedSynthetic Lethality | FSW = 0.0127
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT3G50670 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0516
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT4G36590 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1483
| Unknown | MADS-BOX PROTEIN (AGL40) |
AT2G40290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1022
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G25340 | PredictedAffinity Capture-MS | FSW = 0.0910
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT1G72560 | Predictedsynthetic growth defect | FSW = 0.1352
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT5G60980 | PredictedSynthetic Lethality | FSW = 0.0859
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G18480 | PredictedSynthetic Lethality | FSW = 0.0586
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT4G33730 | PredictedAffinity Capture-WesternReconstituted Complextwo hybrid | FSW = 0.0067
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G19980 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1410
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1130
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G39200 | Predictedsynthetic growth defectbiochemicalAffinity Capture-Western | FSW = 0.1540
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT4G27070 | PredictedReconstituted ComplexbiochemicalSynthetic LethalityAffinity Capture-Western | FSW = 0.1093
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT5G55160 | PredictedAffinity Capture-MS | FSW = 0.0518
| Unknown | SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) PROTEIN BINDING / PROTEIN TAG |
AT1G77990 | Predictedbiochemical | FSW = 0.1268
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT2G29540 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic EnhancementPhenotypic Suppression | FSW = 0.1094
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G01120 | Predictedtwo hybrid | FSW = 0.0062
| Unknown | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING |
AT5G11900 | Predictedtwo hybrid | FSW = 0.0119
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN |
AT5G37055 | Predictedtwo hybrid | FSW = 0.0182
| Unknown | SEF (SERRATED LEAVES AND EARLY FLOWERING) |
AT1G10210 | Predictedinterologs mapping | FSW = 0.0393
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G10600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1989
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUITIN-DEPENDENT PROTEIN CATABOLIC PROCESS LOCATED IN CHLOROPLAST EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G161441) HAS 753 BLAST HITS TO 752 PROTEINS IN 167 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 359 FUNGI - 199 PLANTS - 115 VIRUSES - 0 OTHER EUKARYOTES - 80 (SOURCE NCBI BLINK) |
AT1G13950 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0554
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT1G26320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationSynthetic Lethality | FSW = 0.1703
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G44820 | PredictedAffinity Capture-MS | FSW = 0.0385
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G50090 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | AMINOTRANSFERASE CLASS IV FAMILY PROTEIN |
AT1G55300 | PredictedSynthetic Rescue | FSW = 0.1009
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G63370 | PredictedAffinity Capture-MS | FSW = 0.0030
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G66590 | Predictedinterologs mapping | FSW = 0.0545
| Unknown | COX19 FAMILY PROTEIN |
AT1G66810 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT1G68530 | PredictedAffinity Capture-MS | FSW = 0.1451
| Unknown | KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
AT1G77780 | PredictedSynthetic Lethality | FSW = 0.1235
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT2G04660 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G20290 | Predictedbiochemical | FSW = 0.1296
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G31900 | Predictedbiochemical | FSW = 0.1048
| Unknown | XIF MOTOR |
AT2G35660 | PredictedPhenotypic Enhancement | FSW = 0.0433
| Unknown | CTF2A MONOOXYGENASE/ OXIDOREDUCTASE |
AT2G46230 | PredictedAffinity Capture-MS | FSW = 0.0349
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF652 (INTERPROIPR006984) NUCLEOTIDE BINDING PROTEIN PINC (INTERPROIPR006596) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G265301) HAS 493 BLAST HITS TO 493 PROTEINS IN 165 SPECIES ARCHAE - 21 BACTERIA - 0 METAZOA - 192 FUNGI - 143 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 84 (SOURCE NCBI BLINK) |
AT3G11230 | PredictedPhenotypic Enhancement | FSW = 0.0875
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G12200 | PredictedSynthetic RescuebiochemicalReconstituted ComplexbiochemicalSynthetic RescueSynthetic LethalityAffinity Capture-Western | FSW = 0.1356
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G24010 | PredictedSynthetic Lethality | FSW = 0.0990
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G27110 | Predictedsynthetic growth defect | FSW = 0.0336
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0831
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G45190 | PredictedAffinity Capture-MS | FSW = 0.0464
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT3G48780 | PredictedAffinity Capture-MS | FSW = 0.0040
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.0088
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT4G04700 | Predictedsynthetic growth defectinterologs mappingAffinity Capture-MSSynthetic Lethality | FSW = 0.2124
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G22753 | PredictedAffinity Capture-MS | FSW = 0.0339
| Unknown | SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ CATALYTIC |
AT4G32180 | PredictedSynthetic Rescue | FSW = 0.0359
| Unknown | ATPANK2 (PANTOTHENATE KINASE 2) PANTOTHENATE KINASE |
AT4G35520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridSynthetic RescueReconstituted ComplexCo-purification | FSW = 0.2223
| Unknown | MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING |
AT5G13860 | PredictedbiochemicalCo-purification | FSW = 0.1475
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT1G02100 | Predictedsynthetic growth defect | FSW = 0.0826
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G10090 | PredictedSynthetic Lethality | FSW = 0.0429
| Unknown | UNKNOWN PROTEIN |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.1210
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G13580 | PredictedAffinity Capture-Western | FSW = 0.0994
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G25260 | PredictedSynthetic Lethality | FSW = 0.0396
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G43080 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1989
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT1G68020 | PredictedSynthetic Lethality | FSW = 0.1272
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G80530 | PredictedSynthetic Lethality | FSW = 0.1227
| Unknown | NODULIN FAMILY PROTEIN |
AT2G23080 | PredictedSynthetic Lethality | FSW = 0.0146
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G30800 | PredictedSynthetic Lethality | FSW = 0.1420
| Unknown | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G47090 | PredictedSynthetic Lethality | FSW = 0.0364
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT2G47970 | PredictedAffinity Capture-MS | FSW = 0.1535
| Unknown | NPL4 FAMILY PROTEIN |
AT3G06470 | PredictedbiochemicalReconstituted Complex | FSW = 0.0687
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT5G16170 | Predictedsynthetic growth defect | FSW = 0.0326
| Unknown | UNKNOWN PROTEIN |
AT5G45620 | PredictedSynthetic Lethality | FSW = 0.1203
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G59440 | PredictedAffinity Capture-MS | FSW = 0.1633
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
AT5G67540 | PredictedSynthetic Lethality | FSW = 0.0592
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT5G66360 | PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454