Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G43080 - ( glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein )
27 Proteins interacs with AT1G43080Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07810![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0140
| Unknown | ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE |
AT5G12140![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.7224
| Unknown | ATCYS1 (A THALIANA CYSTATIN-1) CYSTEINE-TYPE ENDOPEPTIDASE INHIBITOR |
AT2G34480![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.3003
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT4G01320![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSsynthetic growth defectPhenotypic Enhancement | FSW = 0.2196
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT3G22890![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0095
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT2G30390![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4507
| Unknown | FC2 (FERROCHELATASE 2) FERROCHELATASE |
AT1G75170![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSinterologs mapping | FSW = 0.4696
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G35020![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2557
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT1G77210![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3807
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G33090![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2134
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT2G40290![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancementtwo hybridAffinity Capture-MSPhenotypic Enhancementsynthetic growth defect | FSW = 0.2677
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G36590![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4619
| Unknown | MADS-BOX PROTEIN (AGL40) |
AT5G47630![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1989
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT1G10600![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSCo-crystal StructureCo-crystal StructureAffinity Capture-MS | FSW = 0.5367
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUITIN-DEPENDENT PROTEIN CATABOLIC PROCESS LOCATED IN CHLOROPLAST EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G161441) HAS 753 BLAST HITS TO 752 PROTEINS IN 167 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 359 FUNGI - 199 PLANTS - 115 VIRUSES - 0 OTHER EUKARYOTES - 80 (SOURCE NCBI BLINK) |
AT2G47970![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3394
| Unknown | NPL4 FAMILY PROTEIN |
AT3G18660![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1026
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G59410![]() ![]() ![]() ![]() | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0386
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G01640![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1244
| Unknown | PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5) |
AT5G59440![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSCo-crystal Structure | FSW = 0.4281
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
AT2G01070![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0447
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK) |
AT2G35390![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0120
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G18860![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0087
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G30842![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-crystal StructureCo-crystal StructureAffinity Capture-MS | FSW = 0.1976
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G58180![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0415
| Unknown | PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN |
AT3G59790![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0207
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT1G43100![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.0667
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT1G78400![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0762
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454