Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G58180 - ( PBS lyase HEAT-like repeat-containing protein )
24 Proteins interacs with AT3G58180Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | Predictedsynthetic growth defect | FSW = 0.0061
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G20260 | PredictedReconstituted ComplexAffinity Capture-MS | FSW = 0.0400
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G12140 | Predictedtwo hybrid | FSW = 0.0536
| Unknown | ATCYS1 (A THALIANA CYSTATIN-1) CYSTEINE-TYPE ENDOPEPTIDASE INHIBITOR |
AT4G33650 | Predictedtwo hybrid | FSW = 0.0214
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT5G20890 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0513
| Unknown | CHAPERONIN PUTATIVE |
AT1G03930 | PredictedSynthetic LethalitySynthetic Rescue | FSW = 0.0298
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G19980 | PredictedAffinity Capture-MS | FSW = 0.0355
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G43460 | PredictedReconstituted Complex | FSW = 0.0566
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT5G19910 | PredictedSynthetic Lethality | FSW = 0.0254
| Unknown | SOH1 FAMILY PROTEIN |
AT1G61040 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0251
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT2G19170 | PredictedSynthetic Lethality | FSW = 0.0677
| Unknown | SLP3 SERINE-TYPE PEPTIDASE |
AT1G02730 | Predictedtwo hybrid | FSW = 0.0116
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G15420 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0204
| Unknown | UNKNOWN PROTEIN |
AT1G31170 | Predictedtwo hybrid | FSW = 0.0060
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G43080 | Predictedtwo hybrid | FSW = 0.0415
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT1G79990 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0516
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT3G25100 | PredictedSynthetic Lethality | FSW = 0.0397
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT4G16970 | PredictedSynthetic Lethality | FSW = 0.0374
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G04880 | PredictedSynthetic Lethality | FSW = 0.0395
| Unknown | ADENOSINE/AMP DEAMINASE FAMILY PROTEIN |
AT5G66100 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0302
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT1G52360 | PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT4G35890 | PredictedSynthetic Lethality | FSW = 0.0282
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT2G32160 | Predictedtwo hybrid | FSW = 0.0362
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT5G13010 | Predictedinteraction prediction | FSW = 0.0093
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454