Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G19910 - ( SOH1 family protein )
82 Proteins interacs with AT5G19910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G21350 | Experimental | FSW = 0.0485
| Unknown | RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR-RELATED |
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.0697
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT1G64790 | PredictedPhenotypic Enhancement | FSW = 0.0785
| Unknown | BINDING |
AT5G13710 | PredictedPhenotypic Enhancement | FSW = 0.1020
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT5G43530 | PredictedPhenotypic EnhancementSynthetic Rescuetwo hybrid | FSW = 0.1646
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT4G35800 | PredictedSynthetic Lethality | FSW = 0.1451
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G63110 | PredictedPhenotypic Enhancement | FSW = 0.2209
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT1G73820 | PredictedPhenotypic Enhancement | FSW = 0.0936
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT1G12520 | Predictedsynthetic growth defect | FSW = 0.2132
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT2G37690 | Predictedtwo hybrid | FSW = 0.0161
| Unknown | PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE PUTATIVE / AIR CARBOXYLASE PUTATIVE |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.2367
| Unknown | SEC22 TRANSPORTER |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0358
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G10330 | PredictedSynthetic Lethality | FSW = 0.0891
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT2G44680 | PredictedPhenotypic Enhancement | FSW = 0.1298
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT3G13940 | PredictedPhenotypic Suppression | FSW = 0.0880
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G12480 | PredictedSynthetic Rescue | FSW = 0.0766
| Unknown | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G21010 | PredictedPhenotypic Enhancement | FSW = 0.0544
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT3G12810 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2811
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G21700 | PredictedPhenotypic Enhancement | FSW = 0.0621
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT3G16980 | PredictedSynthetic Lethality | FSW = 0.1510
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT5G08190 | PredictedSynthetic Rescue | FSW = 0.1172
| Unknown | NF-YB12 (NUCLEAR FACTOR Y SUBUNIT B12) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.2240
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G24500 | PredictedPhenotypic Suppression | FSW = 0.1010
| Unknown | FZF TRANSCRIPTION FACTOR |
AT2G36740 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.4372
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G38560 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic EnhancementPhenotypic EnhancementSynthetic Lethality | FSW = 0.3315
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT2G15430 | PredictedPhenotypic Enhancement | FSW = 0.2347
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G25150 | PredictedPhenotypic Enhancement | FSW = 0.0765
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.1983
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT2G03870 | PredictedPhenotypic Enhancement | FSW = 0.1702
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G44950 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.3306
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT2G31970 | Predictedsynthetic growth defect | FSW = 0.1378
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G57450 | Predictedsynthetic growth defect | FSW = 0.1284
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT4G21710 | PredictedSynthetic Lethality | FSW = 0.1180
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G37560 | PredictedSynthetic Lethality | FSW = 0.0222
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT5G54260 | Predictedsynthetic growth defect | FSW = 0.2228
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G09330 | Predictedtwo hybrid | FSW = 0.0322
| Unknown | UNKNOWN PROTEIN |
AT5G41910 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0819
| Unknown | RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED |
AT1G15780 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2095
| Unknown | UNKNOWN PROTEIN |
AT1G29150 | PredictedPhenotypic Suppression | FSW = 0.1032
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G52740 | PredictedSynthetic Lethality | FSW = 0.2915
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT2G27970 | PredictedPhenotypic Enhancement | FSW = 0.0589
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G10070 | PredictedPhenotypic Enhancement | FSW = 0.1676
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G21060 | PredictedPhenotypic Enhancement | FSW = 0.2549
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22480 | PredictedPhenotypic Suppression | FSW = 0.1716
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.1945
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G17380 | PredictedPhenotypic Enhancement | FSW = 0.0076
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G33240 | PredictedPhenotypic Enhancement | FSW = 0.2262
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
AT5G03220 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.1226
| Unknown | TRANSCRIPTIONAL CO-ACTIVATOR-RELATED |
AT1G04730 | PredictedSynthetic Lethality | FSW = 0.2196
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G08780 | PredictedPhenotypic Suppression | FSW = 0.1854
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | PredictedPhenotypic Suppression | FSW = 0.1624
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G32750 | PredictedPhenotypic Enhancement | FSW = 0.0919
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
AT1G49540 | PredictedPhenotypic Enhancement | FSW = 0.1941
| Unknown | NUCLEOTIDE BINDING |
AT1G54140 | PredictedPhenotypic Enhancement | FSW = 0.2043
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.3124
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G66740 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2241
| Unknown | SGA2 |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.2233
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G18600 | PredictedPhenotypic Suppression | FSW = 0.1174
| Unknown | RUB1-CONJUGATING ENZYME PUTATIVE |
AT2G34770 | PredictedPhenotypic Enhancement | FSW = 0.0448
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G44150 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2244
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G18860 | PredictedPhenotypic Enhancement | FSW = 0.2825
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22590 | PredictedPhenotypic Enhancement | FSW = 0.2639
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G25100 | PredictedSynthetic Lethality | FSW = 0.1569
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT3G42660 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.2907
| Unknown | NUCLEOTIDE BINDING |
AT3G58180 | PredictedSynthetic Lethality | FSW = 0.0254
| Unknown | PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN |
AT3G58560 | PredictedSynthetic Lethality | FSW = 0.1616
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G02460 | PredictedPhenotypic Enhancement | FSW = 0.0320
| Unknown | PMS1 (POSTMEIOTIC SEGREGATION 1) ATP BINDING / MISMATCHED DNA BINDING |
AT4G22140 | PredictedPhenotypic Enhancement | FSW = 0.1653
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.1367
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G10960 | Predictedsynthetic growth defect | FSW = 0.1294
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G23290 | PredictedPhenotypic Suppression | FSW = 0.1363
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G41880 | PredictedPhenotypic Enhancement | FSW = 0.1009
| Unknown | POLA3 DNA PRIMASE |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.1217
| Unknown | ORMDL FAMILY PROTEIN |
AT5G43500 | PredictedPhenotypic Enhancement | FSW = 0.2194
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G48120 | PredictedPhenotypic Enhancement | FSW = 0.1666
| Unknown | BINDING |
AT5G48640 | PredictedPhenotypic Suppression | FSW = 0.1839
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G50320 | PredictedPhenotypic Enhancement | FSW = 0.1961
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G53770 | Predictedsynthetic growth defect | FSW = 0.0690
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G63610 | PredictedPhenotypic SuppressionAffinity Capture-MS | FSW = 0.2255
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G63670 | PredictedPhenotypic Suppression | FSW = 0.2072
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G41700 | PredictedPhenotypic Suppression | FSW = 0.1167
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G66100 | PredictedPhenotypic Enhancement | FSW = 0.2463
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454