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AT1G21700 - ( ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA binding )

132 Proteins interacs with AT1G21700

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G46020	Experimental two hybrid two hybrid Reconstituted Complex pull down	FSW = 0.0268	Class A: nucleus Class D: nucleus (p = 0.78)	TRANSCRIPTION REGULATORY PROTEIN SNF2 PUTATIVE
AT2G33610	Experimental pull down two hybrid two hybrid	FSW = 0.1294	Class A: nucleus Class D: nucleus (p = 0.78)	ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING
AT2G47620	Experimental two hybrid	FSW = 0.0215	Class A: nucleus Class D: nucleus (p = 0.78)	ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT2G28290	Experimental pull down	FSW = 0.0264	Class A: nucleus Class D: nucleus (p = 0.78)	SYD (SPLAYED) ATPASE/ CHROMATIN BINDING
AT4G16280	Experimental	FSW = 0.0545	Unknown	FCA RNA BINDING
AT1G61000	Predicted two hybrid	FSW = 0.0226	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK)
AT1G72370	Predicted synthetic growth defect	FSW = 0.0343	Class C: nucleus	P40 STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G19830	Predicted Affinity Capture-Western two hybrid Phenotypic Enhancement	FSW = 0.0485	Class C: nucleus	AMINOACYL-TRNA HYDROLASE
AT1G03930	Predicted synthetic growth defect synthetic growth defect	FSW = 0.0063	Class C: nucleus	ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT5G19310	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification Co-purification Co-purification Co-purification two hybrid Co-purification Affinity Capture-Western Affinity Capture-MS	FSW = 0.0701	Class C: nucleus	HOMEOTIC GENE REGULATOR PUTATIVE
AT3G01890	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS	FSW = 0.0694	Class C: nucleus	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT3G44530	Predicted Affinity Capture-Western	FSW = 0.0635	Class C: nucleus	HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G13980	Predicted biochemical	FSW = 0.0149	Class C: nucleus	AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT5G11060	Predicted two hybrid	FSW = 0.0070	Class C: nucleus	KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT1G03190	Predicted Phenotypic Enhancement	FSW = 0.0213	Class C: nucleus	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT2G35670	Predicted Phenotypic Enhancement	FSW = 0.0230	Class C: nucleus	FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR
AT3G62310	Predicted Affinity Capture-MS	FSW = 0.0164	Class C: nucleus	RNA HELICASE PUTATIVE
AT2G15430	Predicted Phenotypic Enhancement	FSW = 0.0211	Class C: nucleus	NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G38560	Predicted Phenotypic Enhancement	FSW = 0.0692	Class C: nucleus	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT3G66656	Predicted Synthetic Lethality	FSW = 0.0259	Class C: nucleus	AGL91 TRANSCRIPTION FACTOR
AT4G25340	Predicted Phenotypic Enhancement	FSW = 0.0899	Class C: nucleus	IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT5G25150	Predicted Phenotypic Enhancement	FSW = 0.0437	Class C: nucleus	TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT1G02680	Predicted Phenotypic Suppression	FSW = 0.0174	Class C: nucleus	TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT3G17590	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1091	Class C: nucleus	BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT1G55750	Predicted Phenotypic Enhancement	FSW = 0.0170	Class C: nucleus	TRANSCRIPTION FACTOR-RELATED
AT2G17360	Predicted Phenotypic Enhancement	FSW = 0.1127	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G20260	Predicted synthetic growth defect synthetic growth defect Phenotypic Enhancement	FSW = 0.1411	Unknown	HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT1G64790	Predicted Phenotypic Enhancement	FSW = 0.0393	Unknown	BINDING
AT5G09660	Predicted synthetic growth defect Phenotypic Suppression	FSW = 0.1884	Unknown	PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT3G58610	Predicted two hybrid Phenotypic Enhancement synthetic growth defect synthetic growth defect Affinity Capture-Western Affinity Capture-Western two hybrid two hybrid Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Reconstituted Complex co-fractionation Co-fractionation synthetic growth defect Synthetic Rescue Phenotypic Suppression Phenotypic Enhancement interologs mapping	FSW = 0.3084	Unknown	KETOL-ACID REDUCTOISOMERASE
AT5G54770	Predicted synthetic growth defect Phenotypic Enhancement synthetic growth defect Phenotypic Enhancement synthetic growth defect	FSW = 0.1532	Unknown	THI1 PROTEIN HOMODIMERIZATION
AT1G21640	Predicted Synthetic Lethality	FSW = 0.0177	Unknown	NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT3G56160	Predicted Synthetic Lethality interologs mapping Phenotypic Enhancement	FSW = 0.0890	Unknown	BILE ACIDSODIUM SYMPORTER
AT5G06290	Predicted Synthetic Lethality	FSW = 0.0182	Unknown	2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT5G15450	Predicted synthetic growth defect synthetic growth defect	FSW = 0.1241	Unknown	CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G48860	Predicted Phenotypic Enhancement	FSW = 0.1266	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
ATCG00790	Predicted Affinity Capture-MS	FSW = 0.0120	Unknown	CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT
AT1G45145	Predicted Synthetic Lethality	FSW = 0.0590	Unknown	ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT4G04340	Predicted Phenotypic Enhancement synthetic growth defect Phenotypic Suppression	FSW = 0.1452	Unknown	EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT3G25800	Predicted two hybrid	FSW = 0.0167	Unknown	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT3G45850	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.0277	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT4G14350	Predicted Phenotypic Suppression Affinity Capture-Western	FSW = 0.0838	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT1G50310	Predicted Synthetic Lethality	FSW = 0.0015	Unknown	STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G04750	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Suppression Phenotypic Enhancement synthetic growth defect	FSW = 0.2163	Unknown	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT2G47000	Predicted Phenotypic Suppression	FSW = 0.0181	Unknown	ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE
AT3G01020	Predicted synthetic growth defect synthetic growth defect	FSW = 0.0726	Unknown	ISU2 (ISCU-LIKE 2) STRUCTURAL MOLECULE
AT3G14270	Predicted two hybrid two hybrid Affinity Capture-Western	FSW = 0.0717	Unknown	PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT3G49920	Predicted Phenotypic Suppression	FSW = 0.0247	Unknown	VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL
AT1G75510	Predicted Phenotypic Enhancement	FSW = 0.0467	Unknown	TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT4G10040	Predicted Synthetic Lethality	FSW = 0.0169	Unknown	CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT5G41150	Predicted Phenotypic Enhancement	FSW = 0.0322	Unknown	UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT2G05170	Predicted synthetic growth defect synthetic growth defect Synthetic Lethality synthetic growth defect Synthetic Lethality Synthetic Lethality synthetic growth defect Phenotypic Enhancement	FSW = 0.0826	Unknown	ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT2G31970	Predicted Phenotypic Suppression	FSW = 0.0385	Unknown	RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G19910	Predicted Phenotypic Enhancement	FSW = 0.0621	Unknown	SOH1 FAMILY PROTEIN
AT2G22310	Predicted Phenotypic Enhancement	FSW = 0.0226	Unknown	ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE
AT3G07880	Predicted Phenotypic Enhancement	FSW = 0.0040	Unknown	RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN
AT5G54260	Predicted Affinity Capture-Western	FSW = 0.0533	Unknown	MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G17810	Predicted synthetic growth defect	FSW = 0.0194	Unknown	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT4G13090	Predicted Synthetic Lethality	FSW = 0.0329	Unknown	XYLOGLUCANXYLOGLUCOSYL TRANSFERASE PUTATIVE / XYLOGLUCAN ENDOTRANSGLYCOSYLASE PUTATIVE / ENDO-XYLOGLUCAN TRANSFERASE PUTATIVE
AT1G62800	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality	FSW = 0.1413	Unknown	ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT3G13320	Predicted Phenotypic Suppression	FSW = 0.0187	Unknown	CAX2 (CATION EXCHANGER 2) CALCIUMCATION ANTIPORTER/ CALCIUMHYDROGEN ANTIPORTER
AT1G05180	Predicted synthetic growth defect Phenotypic Enhancement Phenotypic Suppression	FSW = 0.1280	Unknown	AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT1G04020	Predicted Phenotypic Enhancement	FSW = 0.0509	Unknown	BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G04950	Predicted Phenotypic Enhancement	FSW = 0.0368	Unknown	TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G07820	Predicted Phenotypic Enhancement	FSW = 0.0378	Unknown	HISTONE H4
AT1G06790	Predicted Phenotypic Enhancement	FSW = 0.0099	Unknown	RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G07830	Predicted synthetic growth defect	FSW = 0.0156	Unknown	RIBOSOMAL PROTEIN L29 FAMILY PROTEIN
AT1G09810	Predicted Phenotypic Enhancement	FSW = 0.0493	Unknown	ECT11 (EVOLUTIONARILY CONSERVED C-TERMINAL REGION 11)
AT1G11510	Predicted synthetic growth defect	FSW = 0.1232	Unknown	DNA-BINDING STOREKEEPER PROTEIN-RELATED
AT1G25155	Predicted synthetic growth defect	FSW = 0.1255	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G29630	Predicted Synthetic Lethality	FSW = 0.0651	Unknown	NUCLEASE
AT1G32130	Predicted Phenotypic Suppression	FSW = 0.0250	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G35350	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.2114	Unknown	LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G44180	Predicted synthetic growth defect Phenotypic Enhancement Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect Phenotypic Enhancement	FSW = 0.1768	Unknown	AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE
AT1G47830	Predicted Synthetic Rescue Phenotypic Suppression Phenotypic Suppression Synthetic Rescue Phenotypic Suppression Phenotypic Enhancement Synthetic Rescue Synthetic Rescue synthetic growth defect Phenotypic Enhancement Synthetic Rescue Phenotypic Suppression	FSW = 0.2402	Unknown	CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G54140	Predicted Synthetic Lethality	FSW = 0.0571	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G55300	Predicted Phenotypic Enhancement	FSW = 0.1063	Unknown	TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G60620	Predicted Phenotypic Enhancement	FSW = 0.0075	Unknown	ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G66590	Predicted Synthetic Lethality Phenotypic Enhancement Phenotypic Enhancement Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interologs mapping Affinity Capture-Western Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect Synthetic Lethality two hybrid interologs mapping synthetic growth defect Phenotypic Enhancement	FSW = 0.2729	Unknown	COX19 FAMILY PROTEIN
AT1G74810	Predicted Phenotypic Enhancement	FSW = 0.0697	Unknown	BOR5 ANION EXCHANGER
AT1G80410	Predicted synthetic growth defect	FSW = 0.0305	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT1G80500	Predicted Affinity Capture-MS	FSW = 0.0643	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK)
AT2G35390	Predicted interologs mapping	FSW = 0.0162	Unknown	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT3G11230	Predicted Affinity Capture-MS	FSW = 0.0922	Unknown	YIPPEE FAMILY PROTEIN
AT3G18860	Predicted Phenotypic Enhancement	FSW = 0.1225	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22290	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.2197	Unknown	UNKNOWN PROTEIN
AT3G22590	Predicted Phenotypic Enhancement	FSW = 0.0461	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G24010	Predicted synthetic growth defect	FSW = 0.1273	Unknown	ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G24090	Predicted Phenotypic Suppression	FSW = 0.0155	Unknown	GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE
AT3G25900	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.1615	Unknown	HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE
AT3G43980	Predicted Phenotypic Enhancement Phenotypic Enhancement Synthetic Lethality	FSW = 0.0500	Unknown	40S RIBOSOMAL PROTEIN S29 (RPS29A)
AT3G45240	Predicted synthetic growth defect synthetic growth defect Phenotypic Enhancement	FSW = 0.1823	Unknown	GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE
AT3G47610	Predicted Synthetic Lethality Phenotypic Enhancement Phenotypic Enhancement Synthetic Lethality	FSW = 0.1561	Unknown	TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT3G51270	Predicted Affinity Capture-MS	FSW = 0.0403	Unknown	ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT3G53030	Predicted synthetic growth defect synthetic growth defect	FSW = 0.1150	Unknown	SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT3G54490	Predicted Phenotypic Suppression	FSW = 0.0471	Unknown	RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT E) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G14000	Predicted Synthetic Lethality	FSW = 0.0671	Unknown	UNKNOWN PROTEIN
AT4G21490	Predicted synthetic growth defect synthetic growth defect synthetic growth defect Synthetic Lethality Synthetic Rescue	FSW = 0.2504	Unknown	NDB3 NADH DEHYDROGENASE
AT4G25950	Predicted biochemical	FSW = 0.0828	Unknown	VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G27130	Predicted synthetic growth defect synthetic growth defect Synthetic Lethality	FSW = 0.2331	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G29580	Predicted synthetic growth defect	FSW = 0.2576	Unknown	CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT4G34370	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.0403	Unknown	ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING
AT5G08160	Predicted Synthetic Lethality	FSW = 0.0424	Unknown	ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G09740	Predicted Synthetic Lethality	FSW = 0.0226	Unknown	HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10260	Predicted Phenotypic Suppression	FSW = 0.0422	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G11500	Predicted synthetic growth defect Phenotypic Enhancement Phenotypic Enhancement Synthetic Lethality synthetic growth defect	FSW = 0.1462	Unknown	UNKNOWN PROTEIN
AT5G13780	Predicted synthetic growth defect	FSW = 0.0399	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G16170	Predicted Phenotypic Enhancement synthetic growth defect synthetic growth defect Phenotypic Enhancement	FSW = 0.1559	Unknown	UNKNOWN PROTEIN
AT5G16980	Predicted synthetic growth defect Phenotypic Enhancement Affinity Capture-Western synthetic growth defect Phenotypic Enhancement	FSW = 0.2800	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G17860	Predicted Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.2814	Unknown	CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER
AT5G45620	Predicted Phenotypic Enhancement synthetic growth defect synthetic growth defect Phenotypic Enhancement Phenotypic Enhancement Synthetic Lethality	FSW = 0.1820	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G51940	Predicted Phenotypic Enhancement	FSW = 0.0207	Unknown	NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G54940	Predicted Phenotypic Enhancement	FSW = 0.0144	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT5G63610	Predicted Phenotypic Suppression	FSW = 0.0197	Unknown	CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G23460	Predicted synthetic growth defect	FSW = 0.0357	Unknown	POLYGALACTURONASE
AT1G26690	Predicted Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.1546	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT1G27040	Predicted Phenotypic Enhancement	FSW = 0.0731	Unknown	NITRATE TRANSPORTER PUTATIVE
AT1G79210	Predicted synthetic growth defect	FSW = 0.0084	Unknown	20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT1G79730	Predicted Phenotypic Enhancement	FSW = 0.0275	Unknown	ELF7 (EARLY FLOWERING 7)
AT3G10070	Predicted Phenotypic Enhancement	FSW = 0.0340	Unknown	TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT4G22140	Predicted Phenotypic Suppression	FSW = 0.1497	Unknown	DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G36050	Predicted synthetic growth defect synthetic growth defect	FSW = 0.0894	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G01770	Predicted Phenotypic Enhancement	FSW = 0.2282	Unknown	RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G05420	Predicted synthetic growth defect	FSW = 0.0259	Unknown	IMMUNOPHILIN PUTATIVE / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE
AT5G20340	Predicted Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.1784	Unknown	BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT5G49970	Predicted synthetic growth defect	FSW = 0.1181	Unknown	ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G58180	Predicted Phenotypic Enhancement	FSW = 0.0450	Unknown	ATYKT62
AT5G66100	Predicted Phenotypic Enhancement	FSW = 0.0896	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT2G31740	Predicted two hybrid	FSW = 0.0077	Unknown	METHYLTRANSFERASE
AT2G25970	Predicted two hybrid Co-expression	FSW = 0.0331	Unknown	KH DOMAIN-CONTAINING PROTEIN
AT1G69545	Predicted two hybrid	FSW = 0.0079	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN
AT1G14650	Predicted two hybrid Co-expression	FSW = 0.0078	Unknown	SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN / UBIQUITIN FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT1G21700 - ( ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA binding )

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