Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G04340 - ( early-responsive to dehydration protein-related / ERD protein-related )
51 Proteins interacs with AT4G04340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G15710 | PredictedPhenotypic Enhancement | FSW = 0.0487
| Class C:plasma membrane | SIGNAL PEPTIDASE PUTATIVE |
AT5G60540 | PredictedPhenotypic Suppression | FSW = 0.0414
| Class C:plasma membrane | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT1G27450 | PredictedPhenotypic Enhancementtwo hybridPhenotypic EnhancementAffinity Capture-WesternSynthetic Rescue | FSW = 0.0773
| Class C:plasma membrane | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE |
AT4G10450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0327
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L9 (RPL90D) |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.1758
| Class C:plasma membrane | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G22120 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0037
| Class C:plasma membrane | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G49370 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1967
| Class C:plasma membrane | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT5G09590 | PredictedPhenotypic Suppression | FSW = 0.0622
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G20260 | PredictedPhenotypic Enhancement | FSW = 0.0635
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0268
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G10350 | PredictedPhenotypic Enhancement | FSW = 0.0149
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT5G54770 | Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternPhenotypic Enhancementtwo hybridinterologs mapping | FSW = 0.1857
| Unknown | THI1 PROTEIN HOMODIMERIZATION |
AT1G64190 | PredictedPhenotypic Suppression | FSW = 0.0896
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT5G15450 | PredictedPhenotypic Suppression | FSW = 0.0918
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G07180 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1052
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT1G21700 | PredictedPhenotypic Enhancementsynthetic growth defectPhenotypic Suppression | FSW = 0.1452
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0411
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G36170 | PredictedSynthetic LethalityPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementSynthetic Lethality | FSW = 0.1221
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT3G14270 | PredictedReconstituted ComplexReconstituted ComplexCo-purification | FSW = 0.2476
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT5G02730 | PredictedPhenotypic Suppression | FSW = 0.0449
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G47990 | PredictedPhenotypic Enhancement | FSW = 0.0577
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT1G17810 | PredictedPhenotypic Enhancement | FSW = 0.1011
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT1G52300 | PredictedPhenotypic Enhancement | FSW = 0.0270
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT3G13900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1169
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT1G05180 | PredictedPhenotypic EnhancementPhenotypic Enhancementtwo hybridPhenotypic Enhancement | FSW = 0.1994
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0645
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G26690 | PredictedPhenotypic Enhancement | FSW = 0.1506
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G27040 | PredictedPhenotypic Enhancement | FSW = 0.0443
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G29630 | PredictedPhenotypic Enhancement | FSW = 0.0451
| Unknown | NUCLEASE |
AT1G47830 | PredictedPhenotypic Suppression | FSW = 0.1924
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G68020 | PredictedPhenotypic Suppression | FSW = 0.0627
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G75380 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementtwo hybridReconstituted Complex | FSW = 0.2561
| Unknown | WOUND-RESPONSIVE PROTEIN-RELATED |
AT1G80500 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-MSCo-purificationtwo hybridReconstituted Complexinterologs mappingco-fractionationCo-fractionationCo-purificationCo-purificationCo-purificationCo-purificationReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted Complextwo hybridbiochemicalCo-purificationco-fractionationCo-fractionationinterologs mappingPhenotypic EnhancementAffinity Capture-MS | FSW = 0.1815
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G28720 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | HISTONE H2B PUTATIVE |
AT3G11240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0197
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G25260 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.1170
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G50780 | PredictedAffinity Capture-MS | FSW = 0.0475
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT1G07820 | PredictedPhenotypic Enhancement | FSW = 0.1290
| Unknown | HISTONE H4 |
AT1G29970 | PredictedPhenotypic Suppression | FSW = 0.0496
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT4G10130 | PredictedAffinity Capture-MS | FSW = 0.0317
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT5G01770 | Predictedtwo hybridPhenotypic EnhancementReconstituted Complextwo hybridAffinity Capture-Westernco-fractionationCo-fractionationSynthetic RescueReconstituted ComplexPhenotypic Enhancement | FSW = 0.1982
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G16170 | PredictedPhenotypic Enhancement | FSW = 0.0728
| Unknown | UNKNOWN PROTEIN |
AT5G20340 | PredictedPhenotypic Enhancement | FSW = 0.1500
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G38820 | PredictedPhenotypic EnhancementPhenotypic EnhancementReconstituted ComplexAffinity Capture-MSAffinity Capture-MSReconstituted ComplexPhenotypic Enhancementtwo hybrid | FSW = 0.2845
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G38890 | PredictedPhenotypic Enhancement | FSW = 0.0155
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G45620 | PredictedPhenotypic Suppression | FSW = 0.1172
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G58180 | PredictedAffinity Capture-WesternSynthetic Rescuetwo hybrid | FSW = 0.2043
| Unknown | ATYKT62 |
AT4G04695 | Predictedtwo hybridPhenotypic Enhancement | FSW = 0.0381
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G15410 | PredictedPhenotypic Enhancement | FSW = 0.0635
| Unknown | PUX5 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B PRIME GAMMA) PROTEIN BINDING |
AT5G04800 | PredictedPhenotypic Suppression | FSW = 0.0378
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G17330 | PredictedPhenotypic Enhancement | FSW = 0.0635
| Unknown | GAD CALMODULIN BINDING / GLUTAMATE DECARBOXYLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454