Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G02730 - ( allergen V5/Tpx-1-related family protein )
86 Proteins interacs with AT5G02730Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G25780 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0073
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G33120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0677
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT3G28710 | PredictedPhenotypic Suppression | FSW = 0.0182
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT1G16240 | PredictedPhenotypic Enhancement | FSW = 0.0353
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT3G62870 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0647
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G03920 | PredictedSynthetic Rescue | FSW = 0.0113
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT1G11870 | PredictedPhenotypic Enhancement | FSW = 0.0201
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT1G32470 | PredictedPhenotypic Enhancement | FSW = 0.0260
| Unknown | GLYCINE CLEAVAGE SYSTEM H PROTEIN MITOCHONDRIAL PUTATIVE |
AT1G56050 | PredictedPhenotypic Suppression | FSW = 0.0675
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G10070 | PredictedPhenotypic Enhancement | FSW = 0.0667
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0382
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
ATCG00160 | PredictedPhenotypic Suppression | FSW = 0.0061
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT4G36640 | PredictedPhenotypic Enhancement | FSW = 0.0290
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G04340 | PredictedPhenotypic Suppression | FSW = 0.0449
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G21680 | PredictedPhenotypic Suppression | FSW = 0.0341
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G37790 | PredictedPhenotypic Suppression | FSW = 0.0761
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G02490 | PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT4G30860 | Predictedtwo hybrid | FSW = 0.0067
| Unknown | SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE |
AT4G34430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1051
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G45640 | Predictedtwo hybrid | FSW = 0.0067
| Unknown | SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18) PROTEIN BINDING / TRANSCRIPTION REGULATOR |
AT1G79020 | PredictedAffinity Capture-MS | FSW = 0.0641
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0462
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G27720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0497
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT5G40480 | Predictedtwo hybrid | FSW = 0.0112
| Unknown | EMB3012 (EMBRYO DEFECTIVE 3012) |
AT3G49920 | PredictedPhenotypic Enhancement | FSW = 0.0612
| Unknown | VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL |
AT1G64880 | PredictedPhenotypic Enhancement | FSW = 0.0393
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT1G20330 | PredictedPhenotypic Suppression | FSW = 0.0150
| Unknown | SMT2 (STEROL METHYLTRANSFERASE 2) S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE |
AT3G51300 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
AT4G16420 | PredictedPhenotypic Suppression | FSW = 0.0551
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G49060 | PredictedPhenotypic Suppression | FSW = 0.0154
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT5G52650 | Predictedtwo hybrid | FSW = 0.0062
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10C) |
AT5G38470 | Predictedtwo hybrid | FSW = 0.0112
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G52300 | PredictedPhenotypic Suppression | FSW = 0.0168
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT1G19730 | PredictedPhenotypic Suppression | FSW = 0.0557
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT3G44320 | PredictedAffinity Capture-MS | FSW = 0.0499
| Unknown | NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT4G21540 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE |
AT4G33865 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | 40S RIBOSOMAL PROTEIN S29 (RPS29C) |
AT1G77300 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | EFS (EARLY FLOWERING IN SHORT DAYS) HISTONE METHYLTRANSFERASE(H3-K36 SPECIFIC) / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT4G12790 | Predictedtwo hybrid | FSW = 0.0167
| Unknown | ATP-BINDING FAMILY PROTEIN |
AT5G14670 | Predictedtwo hybrid | FSW = 0.0042
| Unknown | ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G25420 | Predictedtwo hybrid | FSW = 0.0111
| Unknown | XANTHINE/URACIL PERMEASE FAMILY PROTEIN |
AT1G09270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1297
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G20693 | PredictedPhenotypic Enhancement | FSW = 0.0695
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G22550 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0473
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G25260 | PredictedAffinity Capture-MS | FSW = 0.0315
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.1212
| Unknown | UNKNOWN PROTEIN |
AT2G03690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0888
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT2G15910 | PredictedPhenotypic Suppression | FSW = 0.0746
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G20290 | PredictedPhenotypic Suppression | FSW = 0.0712
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.0536
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G41340 | PredictedPhenotypic Enhancement | FSW = 0.0320
| Unknown | RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT D) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G46070 | PredictedAffinity Capture-MS | FSW = 0.0751
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT3G11230 | PredictedPhenotypic Enhancement | FSW = 0.0606
| Unknown | YIPPEE FAMILY PROTEIN |
AT4G29640 | PredictedAffinity Capture-MS | FSW = 0.0898
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G01390 | PredictedAffinity Capture-MS | FSW = 0.0372
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.1150
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT1G02100 | PredictedPhenotypic Enhancement | FSW = 0.0840
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G10210 | PredictedPhenotypic Enhancement | FSW = 0.0331
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G10980 | PredictedPhenotypic Suppression | FSW = 0.0407
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT1G13580 | PredictedPhenotypic Suppression | FSW = 0.0771
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G25510 | PredictedAffinity Capture-MS | FSW = 0.1119
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT1G34580 | PredictedPhenotypic Enhancement | FSW = 0.0302
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G43910 | PredictedPhenotypic Enhancement | FSW = 0.0320
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G47830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0765
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G66810 | PredictedAffinity Capture-MS | FSW = 0.0704
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT1G78970 | PredictedPhenotypic Suppression | FSW = 0.0254
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0649
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G23820 | PredictedPhenotypic Suppression | FSW = 0.0599
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.0690
| Unknown | UNKNOWN PROTEIN |
AT2G31260 | PredictedPhenotypic Enhancement | FSW = 0.0352
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G47970 | PredictedAffinity Capture-MS | FSW = 0.0236
| Unknown | NPL4 FAMILY PROTEIN |
AT3G01100 | PredictedPhenotypic Enhancement | FSW = 0.0970
| Unknown | HYP1 (HYPOTHETICAL PROTEIN 1) |
AT3G06470 | PredictedPhenotypic Enhancement | FSW = 0.0529
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G18660 | PredictedPhenotypic Suppression | FSW = 0.1391
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G18850 | PredictedPhenotypic Enhancement | FSW = 0.0374
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G27580 | PredictedAffinity Capture-MS | FSW = 0.1122
| Unknown | ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G59540 | PredictedPhenotypic Enhancement | FSW = 0.1166
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G13020 | PredictedPhenotypic Enhancement | FSW = 0.0696
| Unknown | MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G19560 | PredictedPhenotypic Suppression | FSW = 0.1073
| Unknown | CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G19645 | PredictedPhenotypic Enhancement | FSW = 0.0299
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT5G01430 | PredictedPhenotypic Enhancement | FSW = 0.0240
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G14060 | PredictedPhenotypic Enhancement | FSW = 0.1196
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G44830 | PredictedPhenotypic Suppression | FSW = 0.1296
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G41700 | PredictedPhenotypic Enhancement | FSW = 0.0454
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G59850 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0457
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454